Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_023557.1 Length=271084 Score E Sequences producing significant alignments: (Bits) Value seq565 143 5e-29 seq4242 91.5 3e-13 >seq565 Length=530 Score = 143 bits (158), Expect = 5e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 71290 AAAAACGATCAGATGGCTGAACCGATGTTCCTGGGTCAGTCGGTTAACGTCTCACGTTAT 71349 ||||| || ||| || || ||||||||| | || ||||| || ||||| | |||| Sbjct 319 AAAAATGACCAGCTGAAAGAGCCGATGTTCTTCGGCCAGTCAGTGAACGTTGCCCGTTTC 378 Query 71350 GATCAGCAGAAGTACCCCGCGTTCGAAAAGCTGATTGAGAAACAACTTTCATTCTTCTGG 71409 || |||||||| ||| | || ||||||||||| ||||| || || || ||||||||| Sbjct 379 GACCAGCAGAAATACGACATCTTTGAAAAGCTGATCGAGAAGCAGCTCTCTTTCTTCTGG 438 Query 71410 CGACCTGAAGAGGTGGATGTTTCGCAAGACCGTATCGACTTCCAGGGGTTGCCAGATCAT 71469 || || |||||||| || || |||| || || ||||||| |||| | |||| || || Sbjct 439 CGTCCGGAAGAGGTTGACGTCTCGCGCGATCGCATCGACTATCAGGCGCTGCCGGAGCAC 498 Query 71470 GAAAAACACATCTTCGTTTCTAACCTGAAATA 71501 || || ||||||||| | ||||||||| || Sbjct 499 GAGAAGCACATCTTCATCAGTAACCTGAAGTA 530 >seq4242 Length=525 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165194 TCTATAGTTCAGTCGGTAGAACAGCGGACTGTTAATCCGTAGGTCGCTGGTTCGAATCCA 165253 ||| |||||||||||||||||| |||||||||||||||||| ||| ||||||||| |||| Sbjct 229 TCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCA 288 Query 165254 GCTAGACCAGCCA 165266 | ||| ||||| Sbjct 289 GTCAGAGGAGCCA 301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 867075447924000