Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_023693.1 Length=148612 Score E Sequences producing significant alignments: (Bits) Value seq15209 111 1e-19 >seq15209 Length=568 Score = 111 bits (122), Expect = 1e-19 Identities = 220/323 (68%), Gaps = 2/323 (1%) Strand=Plus/Minus Query 25994 GTAATCCATTCATTTTTAAAAGCAATCTCTTCCAGGCATGCAACCTTCATACCTTGTTGC 26053 || ||||| |||| | | | || || ||||||||||| |||||||| | ||||| || Sbjct 353 GTGATCCACCCATTGTGATAGGCGATTTCTTCCAGGCAAGCAACCTTGAGGCCTTGCCGC 294 Query 26054 TTCTCTATTGCATGAACAAATTGAGATGCTTCCATAAGACTTTCATGTGTTCCTGTATCC 26113 | ||| || | |||||| || ||| ||||| | || ||||| || || |||||| Sbjct 293 TGCTCGATCGTATGAACGAAATGACTGGCTTCAAGTAGCGAGTCATGAGTGCCAGTATCC 234 Query 26114 AGCCAAGTGAAACCTCTTCCTAGTTTACAGACACGTAAAGTCTTTTCTTTCCA-GTACAT 26172 | ||| | ||| |||| || || | ||||| || ||| || | || | ||| Sbjct 233 AACCAGGCGAAGCCTCGACCGAGCATTTCGACACTCAATGTC-TTGCGCTCAAGGTAGGC 175 Query 26173 CTCATTTATATCCGTAATCTCTAACTCCCCTCTAGCAGAAGGTTTAACGCTCTTAGCTTT 26232 ||| | ||| || || || | ||| || | || ||| || || | | ||||||| | Sbjct 174 ACGATTCACATCGGTGATTTCCAGCTCTCCACGAGAAGAGGGCTTGATGTTCTTAGCAAT 115 Query 26233 CTGTATAACAGAATTATCGTAAAAGTACAAGCCTGTGATTGCGTAGTTGCtttttggtgt 26292 || | |||| |||||||| || |||||||| || | ||||| ||| ||| || | Sbjct 114 CTCGACAACATCGTTATCGTAGAAATACAAGCCGGTTACCGCGTAATTGGATTTAGGCTT 55 Query 26293 ttttggtttttCTTCAATACTCA 26315 ||| || ||||| ||||||| Sbjct 54 GAGTGGCTTCTCTTCGATACTCA 32 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475284948012000