Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq350 111 3e-19 seq314 102 1e-16 >seq350 Length=253124 Score = 111 bits (122), Expect = 3e-19 Identities = 202/296 (68%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 143003 CGATCCCGTCTTGCATATAGAACTTAGGAGATGGGCGGATGTTTTTCTTATAGCGCCCTT 143062 |||||| || | ||||| || | | | |||||| ||| | | | || || || || Sbjct 41070 CGATCCTGTGCTACATATTGATTTGGGTAAATGGGCCGATTTGATGTTAATTGCACCATT 41011 Query 143063 AACGGCAAATACGTTAGCAAAAATAGCCAACGGTATATGCGATAATTTACTAACATCTAT 143122 | |||||||| || || ||||| |||| ||| || || |||||||||||| | || Sbjct 41010 AGATGCAAATACATTGGCCAAAATGGCCACCGGCATTTGTGATAATTTACTATTGTGTAC 40951 Query 143123 AGTAAGAGCCTGGGATATAAATAAACCTCTTATTTTTTGTCCCGCTATGAATAGCCTTAT 143182 | |||||||| || | | || ||| | |||||||| | ||||||| | || Sbjct 40950 GACACGAGCCTGGAATCTGGAAAAGGGTCTATTCTTTTGTCCGTCAATGAATACACGAAT 40891 Query 143183 GTGGGAACATCCTATTACAGAAAAACATATAGATGCTTTAAAACATATGGGTTTCATAGA 143242 |||| ||||||| || ||| || | || || ||| | | ||| | ||| ||| || Sbjct 40890 GTGGAAACATCCAATAACAAAACAGCAAATCGATATTCTTAAAAGTTGGGGCCACATTGA 40831 Query 143243 AATAGAATGCATAGaaaaaaaaCTAGCCTGCGGAGACATAGGAAATGGTGCTATGG 143298 ||| ||||||| |||||| || ||||| ||||| || ||||||| |||| Sbjct 40830 AATTAAATGCATTTCCAAAAAATTAATGTGCGGTGACATTGGCTATGGTGCAATGG 40775 >seq314 Length=2668924 Score = 102 bits (112), Expect = 1e-16 Identities = 235/345 (68%), Gaps = 7/345 (2%) Strand=Plus/Minus Query 182866 GAACTATCGGATAATTTTTGTTACTATAATAAACATTACGATAGTGTTCA-GTCTACTCA 182924 ||| |||||||||||||||||| |||||| || |||| ||| | | | | ||| Sbjct 825676 GAATTATCGGATAATTTTTGTTTTTATAATGAAAATTATGATTCATTAAAAGGTTGTTCA 825617 Query 182925 CGCATGGGCT-AGAAGAACATTAGAAGATCACGTTAATGATCCTAGAAAGTATATCTATT 182983 | ||||| || | ||||||| ||| || || ||| |||| | |||||| Sbjct 825616 TCC-TGGGCACAGGA-AACATTAAAAGCGCATAGCAAAGATAAAAGAACATGGATCTATA 825559 Query 182984 CTATTAAACAACTCGAAAAGGCAGAAACACATGACCCTCTATGGAATGCATCACAAATAC 183043 | | | ||| | | || |||| ||||| ||| |||||| | |||| || | Sbjct 825558 CGGTGGATCAATTGGCTGGAGCCAAAACCCATGATGATCTGTGGAATTCGGCACAGATTC 825499 Query 183044 AGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTACTGGGCTAAAAAGATAC 183103 | ||| | ||||||||||||||| ||||| | || ||||| ||||| ||||||||| Sbjct 825498 AACTGAATAAAGAAGGAAAAATGCACGGTTTTCTTCGCATGTATTGGGCAAAAAAGATAT 825439 Query 183104 TTGAATGGACAAGAACTCCGGAAGATGCTTTGAGTTATAG-TATCTATATGAACAATAAG 183162 | |||||||| | | |||||| | ||| | || ||| | || ||| |||| || | Sbjct 825438 TGGAATGGACCGAATCACCGGAAAAGGCTCTCAG-TATCGCCATATATTTGAATGATTAT 825380 Query 183163 TACGAACTAGACGGTACGGATCCTAACGGATACGTAGGT-TGTAT 183206 || | |||| ||| ||||| || ||||| || ||| ||||| Sbjct 825379 TATGCTATAGATGGTCGCGATCCAAATGGATATGTTGGTATGTAT 825335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903134812636000