Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq18152 165 2e-35 seq259 125 2e-23 seq191 86.0 1e-11 >seq18152 Length=5868 Score = 165 bits (182), Expect = 2e-35 Identities = 374/557 (67%), Gaps = 13/557 (2%) Strand=Plus/Minus Query 110607 GGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCG 110666 |||||||||| ||| | ||||| |||| || ||||||| | | ||| || | Sbjct 4757 GGAGGAATTGCTATAAGCATTCATAATATCCGTGCAAAAGGTACTATTATTGCTGGAAAT 4698 Query 110667 AAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATAT 110726 || |||| |||| || |||||||| | ||| | || || || | || || | Sbjct 4697 AATGGTGTATCAAAGGGTATTGTTCCAGTTTTACGCGTTTTTAATGCAACCGCTCGTCAC 4638 Query 110727 GTGAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCAT 110783 || |||||||||| ||| ||| ||| |||| || || ||| | || || |||||| Sbjct 4637 GTCGATCAAGGTGGAAATAAAAGACCTGGTGCATTCGCAATATATTTAGAGCCATGGCAT 4578 Query 110784 TCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCA 110843 | ||| | ||||| || ||| | |||||||| ||| || || || || | Sbjct 4577 GCTGATGTTTTTGATTTTTTAAATCTTCGTAAGAATACCGGTCAAGAGGAGGAACGGTGT 4518 Query 110844 CGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAAT 110903 ||||||||||||| || | |||||| ||||| | || ||| | |||||| ||| || Sbjct 4517 CGTGATTTATTTTTGGCTCTATGGATTCCAGATCTGTTTATGCAGCGTGTTGAAGCCGAT 4458 Query 110904 GGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAA 110963 |||||| | |||||||| || || || | | ||| | | |||| || || Sbjct 4457 CAAATGTGGAGCTTAATGTGTCCACAAAAATCACCCGATTTATATAAAGTATGGGGTCAA 4398 Query 110964 GAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTT---CG-CAAACAAAT 111019 || |||||| |||||| ||||||||||| || ||||| | | || |||||||| Sbjct 4397 GAATTTGAAATGCTTTACACTAAATATGAAAACGAGGGCAAATATGAACGTCAAACAAA- 4339 Query 111020 TCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTA 111079 || | || | ||||| |||| || || ||| |||||||||| || || || Sbjct 4338 ---GGCACGTGATTTATGGTTTCAAATATTTCAAAGTCAAATTGAAACTGGTACACCGTA 4282 Query 111080 TATTTTGTATAAAGATCATA-TTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTA 111138 || | || || || || | | ||||| ||| ||||||| |||| | ||||| ||| Sbjct 4281 CATACTTTACAAGGA-CACAGTCAATCGAAAAAATAATCAACAGAATCTTGGAACCATTC 4223 Query 111139 AGTCTAGTAATTTGTGC 111155 | ||||||||||||| Sbjct 4222 GTTGTAGTAATTTGTGC 4206 >seq259 Length=163994 Score = 125 bits (138), Expect = 2e-23 Identities = 139/184 (76%), Gaps = 6/184 (3%) Strand=Plus/Plus Query 305307 GACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGT 305366 ||||||| ||| |||||| ||| | || ||| |||| ||| || |||| |||||| Sbjct 37700 GACATTTACGTGATGATGATTTAGTTATATTTAATCGGCAGCCAACATTGCACAAAATGA 37759 Query 305367 CTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTG 305426 |||||||| |||| ||| ||||| ||| | | | ||||| || | ||| ||||| Sbjct 37760 GTATGATGGGCCATAGAGTTAAAGTGTTACCATGGTCAACATTCCGTATGAATTTAAGT- 37818 Query 305427 CTTGTACG---CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTC 305483 ||||| || || ||||||||||||||||| |||||||||||| |||||||||| | Sbjct 37819 --TGTACATCACCGTACAATGCGGATTTTGATGGTGATGAAATGAATTTGCATGTACCAC 37876 Query 305484 AATC 305487 |||| Sbjct 37877 AATC 37880 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 304886 TTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAGGCATCT 304945 ||||||| |||| | || ||||| | || ||||| || | || || || ||| | Sbjct 37285 TTACAATTTCATGTGGCCACATTTGTTGACAATGATATGCCGGGTATGCCGCGTGCAACA 37344 Query 304946 CAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGT 305005 |||| ||| || | ||| || || | | | | || | ||||| ||||| ||||| Sbjct 37345 CAAAAATCCGGAAAACCATTGAAAGCTGTCAAAGCTCGACTCAAAGGAAAAGAAGGTCGA 37404 Query 305006 ATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCT 305065 ||||| |||||| | ||||||||||||||||||||| || | | ||| |||||||| Sbjct 37405 ATTCGTGGTAATTTGATGGGAAAACGTGTTGATTTTTCGGCTCGTACTGTCATCACACCC 37464 Query 305066 GAT 305068 ||| Sbjct 37465 GAT 37467 >seq191 Length=3545575 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/104 (80%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 167239 TCATTACACCACCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTA 167297 |||| | ||| |||||||| || |||||| |||| ||||||||||| ||||||| || Sbjct 1227411 TCATCATACCGCCAGCATTGTCAAATTCAC-CGCAATAATTTGGTGCCGAAAATAATGTG 1227469 Query 167298 ACTAATTTACGATTGAAAAATAATTCATAACCATCTTCAACAAC 167341 || |||| ||| || ||| ||||||||||| |||||||| || Sbjct 1227470 ACCAATTGACGTTTAGCAAAGAATTCATAACCGTCTTCAACGAC 1227513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186440632195475