Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq17930 123 2e-23 seq193 123 2e-23 seq28 100 2e-16 >seq17930 Length=2109152 Score = 123 bits (136), Expect = 2e-23 Identities = 177/247 (72%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| || |||||||||| || || ||||| || ||||||||||| Sbjct 1835535 ACCACCACGAAGACGCAATACCAAATGTAATGTTGATTCCTTTTGGATATTGTAATCGGA 1835476 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| || | || ||||||||||| ||||||||||||||||| || || ||| | || Sbjct 1835475 CAATGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGGTCTGGTGG 1835416 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| ||||| | | |||| || | |||||| || || | Sbjct 1835415 AATGCCTTCTTTGTCTTGGATTTT-AGCCTTGACATTTTCGATTGTGTCGGATGGCTCGA 1835357 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTGTGT 33760 | |||| ||||| || || || |||| ||||| || || || ||||| || |||| Sbjct 1835356 CTTCAAGTGTGATAGTCTTGCCGGTTAGAGTTTTAACGAAAATTTGCATCTTTCTGGTGT 1835297 Query 33761 TTATCGC 33767 || |||| Sbjct 1835296 TTTTCGC 1835290 >seq193 Length=1219868 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||||| | || |||||||| ||||| || ||||| Sbjct 520565 ACCACCACGAAGACGGAGAACCAAATGCAATGTTGATTCTTTTTGAATGTTATAGTCGGA 520624 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| |||| || || ||||| ||||| |||||||||||||| |||||| | || Sbjct 520625 TAAAGTGCGACCGTCTTCTAACTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGG 520684 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| || || | | |||| || | |||||| || ||| | Sbjct 520685 AATACCTTCTTTGTCTTGGATCTT-GGCCTTGACATTTTCAATGGTGTCTGATGGTTCAA 520743 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| ||||| || || || ||||| |||||||| |||||| Sbjct 520744 CTTCCAATGTGATGGTTTTTCCAGTCAATGTTTTGACAAAGATTTGCATA 520793 Score = 118 bits (130), Expect = 7e-22 Identities = 174/244 (71%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| || |||||||| | ||| |||||||| ||||| || ||| Sbjct 521686 ACCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTATAGTCGCT 521745 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || ||||||||||| |||||||||||||||||||| || ||| | || Sbjct 521746 CAAAGTACGACCATCTTCCAATTGTTTACCGGCAAAAATCAAACGCTGTTGGTCTGGTGG 521805 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| || || | | |||| || | |||||| || ||| | Sbjct 521806 AATTCCTTCTTTGTCTTGGATCTT-GGCCTTGACATTTTCAATGGTGTCTGATGGTTCGA 521864 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTGTGT 33760 | || | ||||| ||||| || || || ||||| ||||| || ||||| ||| | || Sbjct 521865 CCTCCAAAGTGATGGTTTTTCCGGTCAATGTTTTCACAAAAATTTGCATGGTTCCTCTGA 521924 Query 33761 TTAT 33764 |||| Sbjct 521925 TTAT 521928 Score = 114 bits (126), Expect = 8e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| || |||||||| | || || || || |||||||| ||| Sbjct 521230 ACCACCACGAAGACGCAAGACCAAATGCAATGTTGATTCCTTCTGAATGTTGTAGTCGCT 521289 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| || |||| ||||||||||| ||||| |||||||||||||| |||||| | || Sbjct 521290 CAATGTACGACCGTCTTCCAATTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGG 521349 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| || || | | ||| | || | |||||| || ||| | Sbjct 521350 AATACCTTCTTTGTCTTGGATCTT-GGCCTTAACGTTTTCGATGGTGTCTGATGGTTCAA 521408 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || || ||||| ||||| || |||||| Sbjct 521409 CTTCCAAAGTGATGGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCATA 521458 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| || |||||||| | ||| |||||||| |||||||| ||| Sbjct 521002 ACCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCT 521061 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || ||||||||||| || ||||||||||| || || |||||| | || Sbjct 521062 CAAAGTACGACCATCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGG 521121 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| |||||||| || || | | ||| | || | |||||| || ||| | Sbjct 521122 AATACCCTCTTTGTCTTGGATCTT-GGCCTTAACGTTTTCGATGGTGTCTGATGGTTCAA 521180 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| ||||| || || || ||||| ||||| || |||||| Sbjct 521181 CTTCCAAAGTGATGGTTTTGCCAGTCAATGTTTTGACAAAAATTTGCATA 521230 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||||| | || |||||||| ||||| || ||| Sbjct 521458 ACCACCACGAAGACGGAGAACCAAATGCAATGTTGATTCTTTTTGAATGTTATAGTCGCT 521517 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || |||| || || ||||| ||||| |||||||||||||| |||||| | || Sbjct 521518 CAAAGTACGACCGTCTTCTAACTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGG 521577 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| || || | | |||| || | |||||| || ||| | Sbjct 521578 AATACCTTCTTTGTCTTGGATCTT-GGCCTTGACATTTTCAATGGTGTCTGATGGTTCAA 521636 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || || ||||| |||||||| |||||| Sbjct 521637 CTTCCAATGTGATGGTCTTGCCAGTCAATGTTTTGACAAAGATTTGCATA 521686 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||| | || || ||||| || || || ||| | ||| || | || ||| Sbjct 520079 ACCAAATGCAATGTTGATTCCTTTTGGATATTATAGTCGCTCAATGTACGGCCATCTTCC 520138 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 ||||| || |||||||||||||||||||| |||||| |||| | |||||||||||| Sbjct 520139 AATTGCTTGCCGGCAAAAATCAAACGCTGTTGATCTGGCGGAATACCTTCTTTGTCTTGG 520198 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| | | || | || | |||||| || ||| || || | ||||| ||||| Sbjct 520199 ATTTT-AGCCTTGACGTTTTCGATGGTGTCTGATGGTTCAACCTCCAAAGTGATGGTTTT 520257 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || || ||||| || || || |||||| Sbjct 520258 TCCGGTCAATGTTTTGACGAAAATTTGCATA 520288 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| || |||||||| | ||| |||||||| |||||||| ||| Sbjct 520288 ACCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCT 520347 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || ||||||||||| || ||||||||||| || || |||||| | || Sbjct 520348 CAAAGTACGACCATCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGG 520407 Query 33642 CACACCTTCTTTGTC 33656 | ||| |||||||| Sbjct 520408 AATACCCTCTTTGTC 520422 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| || |||||||| | ||| |||||||| ||||| || ||| Sbjct 520793 ACCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTATAGTCGCT 520852 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || ||||||||||| || ||||||||||| || || |||||| | || Sbjct 520853 CAAAGTACGACCATCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGG 520912 Query 33642 CACACCTTCTTTGTC 33656 | |||||||||||| Sbjct 520913 AATACCTTCTTTGTC 520927 >seq28 Length=2173237 Score = 100 bits (110), Expect = 2e-16 Identities = 164/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | |||||||| || || || ||||| |||||||| |||| Sbjct 1270007 CACCACCACGAAGACGGAGAACCAAATGGAGTGTTGATTCCTTTTGAATGTTGTAGTCGG 1269948 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | | ||| || | || ||||||||||| || ||||| || ||||| || |||||| | | Sbjct 1269947 ACAATGTACGACCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTG 1269888 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| ||||| | | |||| || | ||||| | ||| Sbjct 1269887 GAATTCCTTCCTTGTCTTGGATTTT-GGCCTTGACATTTTCGATAGTGTCTGACGGTTCG 1269829 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTT 33753 || || | ||||| || ||||| || | ||||| || || |||||||| ||| Sbjct 1269828 ACTTCGAGAGTGATAGTCTTACCCGTGAGGGTTTTAACGAAAATCTGCATGGTT 1269775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328605951192000