Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq193 105 2e-17 seq17930 87.8 4e-12 seq28 87.8 4e-12 >seq193 Length=1219868 Score = 105 bits (116), Expect = 2e-17 Identities = 152/213 (71%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||| | || || ||||| |||||||||||||| ||| || ||||| | Sbjct 521221 TTTTGTCAAAACATTGACTGGCAAAACCATCACTTTGGAAGTTGAACCATCAGACACCAT 521162 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 |||| || ||| ||||| ||||| ||||| || ||| || || ||| || | Sbjct 521161 CGAAAACGTTAAGGCCAAGATCCAAGACAAAGAGGGTATTCCACCAGATCAACAACGATT 521102 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 || || || || || || ||||||||||| | |||||| ||| |||||| | || || Sbjct 521101 GATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTGAGCGACTACAACATTCAAAA 521042 Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| || ||| | || | || ||| | ||||| Sbjct 521041 AGAATCAACTTTGCATTTGGTATTGCGTCTTCG 521009 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || |||||||| ||||||||||| || ||| || ||||| | ||| Sbjct 521898 AAAACATTGACCGGAAAAACCATCACTTTGGAGGTCGAACCATCAGACACCATTGAAAAT 521839 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| |||||||||||| || ||| || | | || || Sbjct 521838 GTCAAGGCCAAGATCCAAGACAAAGAAGGAATTCCACCAGACCAACAGCGTTTGATTTTT 521779 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || || ||||||||||| | |||||| ||| || ||| | || ||||| || Sbjct 521778 GCCGGTAAACAATTGGAAGATGGTCGTACTTTGAGCGACTATAACATTCAAAAAGAATCA 521719 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| | || | || ||| | ||||| Sbjct 521718 ACTTTGCATTTGGTATTGCGTCTTCG 521693 Score = 95.1 bits (104), Expect = 3e-14 Identities = 153/216 (71%), Gaps = 7/216 (3%) Strand=Plus/Minus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||| | || || || || |||||||||||||| ||| || ||||| | Sbjct 521449 TTTTGTCAAAACATTGACTGGCAAGACCATCACTTTGGAAGTTGAACCATCAGACACCAT 521390 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA-AGAC 206296 |||| || ||| ||||| ||||| |||||||| ||| || || |||| || Sbjct 521389 CGAAAACGTTAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGA---TCAACAGCG 521333 Query 206297 TT--ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCA 206354 || || |||||||| || || |||||||| || | || ||| ||| |||||| | || Sbjct 521332 TTTGATTTTCGCCGGTAAACAATTGGAAGACGGTCGTACATTGAGCGACTACAACATTCA 521273 Query 206355 GAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| || || || | || | || ||| | ||||| Sbjct 521272 GAAGGAATCAACATTGCATTTGGTCTTGCGTCTTCG 521237 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/186 (72%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| | || |||||||| ||||||||||| || ||| || ||||| ||||| Sbjct 520273 CAAAACATTGACCGGAAAAACCATCACTTTGGAGGTTGAACCATCAGACACCATCGAAAA 520214 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA-AGACTT--AT 206300 || ||| || || ||||| |||||||| ||| ||| || |||| || || || Sbjct 520213 CGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCGCCAGA---TCAACAGCGTTTGAT 520157 Query 206301 CTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGA 206360 || ||||| ||||| ||||||||||| | || ||| ||| || || |||| || || Sbjct 520156 TTTTGCCGGCAAGCAATTGGAAGATGGCCGTACATTGAGCGACTATAATATCCAAAAGGA 520097 Query 206361 GTCTAC 206366 || || Sbjct 520096 ATCAAC 520091 >seq17930 Length=2109152 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || ||||| | ||||| || || |||||| ||||| Sbjct 1835323 AAAACTCTAACCGGCAAGACTATCACACTTGAAGTCGAGCCATCCGACACAATCGAAAAT 1835382 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || ||||| |||||||| ||| || ||| ||| | | || || Sbjct 1835383 GTCAAGGCTAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAACAACGTTTGATTTTT 1835442 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || || ||||||||||| | || ||| |||||||||| |||| || || || Sbjct 1835443 GCCGGTAAACAATTGGAAGATGGCCGTACATTGTCCGATTACAATATCCAAAAGGAATCA 1835502 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || | || | || ||| | ||||| Sbjct 1835503 ACATTACATTTGGTATTGCGTCTTCG 1835528 >seq28 Length=2173237 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || |||||| | ||||| ||| || ||||| ||||| Sbjct 1269794 AAAACCCTCACGGGTAAGACTATCACTCTCGAAGTCGAACCGTCAGACACTATCGAAAAT 1269853 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || ||||| || ||||||||| || || ||| | | ||||| Sbjct 1269854 GTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCACCAGATCAACAACGTTTAATCTTT 1269913 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || ||||||||||| | || ||| |||| |||||| | || || || || Sbjct 1269914 GCTGGTAAACAATTGGAAGATGGTCGTACATTGTCCGACTACAACATTCAAAAGGAATCA 1269973 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || | ||| | | ||||| Sbjct 1269974 ACACTCCATTTGGTTCTCCGTCTTCG 1269999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181450197616475