Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq29 174 1e-38 seq28 129 6e-25 seq17930 113 4e-20 seq193 111 1e-19 seq6000 84.2 2e-11 >seq29 Length=2096867 Score = 174 bits (192), Expect = 1e-38 Identities = 696/1082 (64%), Gaps = 23/1082 (2%) Strand=Plus/Minus Query 146549 CAACAGTGAATTG--TTGTGTGTGCGCCGCAGGTTTTGTGCGCAAATAATACATGCCCGT 146606 ||||||| ||||| ||| | |||| || ||| ||||||||||||||||| || || Sbjct 938194 CAACAGTAAATTGAATTGGATTTGCG--GCTGGTCGAGTGCGCAAATAATACATTCCTGT 938137 Query 146607 TTTGAGGCCACATCGCCACGAGTGATTGTGAATCGAAGTCATGATGGCGTACGTCGGCTC 146666 |||||| || | ||| | | | |||||||||||||| | ||||| || || || Sbjct 938136 TTTGAGACCGGCTTTCCATGCATAAAAATGAATCGAAGTCATTTTTGCGTATGTTGGTTC 938077 Query 146667 CGCCACGAAAAGATTAAACGATTGGCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCAT 146726 ||||| | ||| |||||||| |||||||| ||||| || || || || ||||| Sbjct 938076 GGCCACATGCAAATTGAACGATTGACTTTGATCGATGAACGCACCCCGATCAGCAGCCAT 938017 Query 146727 CTCAATCATGCGTTTTGTCTTC-ATTTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTAT 146785 | || | ||||| | ||||||||| |||||||||| | | || | Sbjct 938016 ATTGATGGTT-GTTTTAACAGATATTTCCCAAACGGTTTTGTATAAATCGCGAATTTCTT 937958 Query 146786 CTGGAATACCTTCAATGTTTTGAATAGAGCCCTTGTGCGCAAAAATA--GTGTTTCGTAT 146843 |||||| | | || |||||||| || || | | |||| || || |||| | | Sbjct 937957 GTGGAATTCGTGTGATATTTTGAATTGAACCATAATCGGCAATGATTTCGTTTTTCATGT 937898 Query 146844 T-TCGGGCGTG-TAAAGGTTTAGTTTAATGAGGTCATCAATTAAATACTGATTGACCACT 146901 ||| | || | ||| | | || || | || | || |||||||||||| Sbjct 937897 CATCGTCCCACATATCGATTTCGGTCAAA----TCTTTGATCAGATGATGATTGACCACT 937842 Query 146902 TGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGCTCAAAAGAC 146961 ||||| || || | || ||||| | ||| | ||| ||| |||| || || || Sbjct 937841 TGAAATTCACCGGAAAGAACACGGCGATTATAAATATTTGATGTGTAAGGTTCGAATGAT 937782 Query 146962 TCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAA 147021 ||||| ||||| | ||||| ||||| | || || ||||| || | || |||||| Sbjct 937781 TCATTGTTGCCGAGAATTTGAGCCGTACTAGCTGTCGGCATTGGAGCGAGTAATAATGAA 937722 Query 147022 TTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCACA--TCGACG 147079 ||||| | ||| | | || || || || | ||| | ||| | ||| | Sbjct 937721 TTTCGTACACCATGTTTAGCAATTTTCGTTTTTAATGCAGCCCAATTCCATAAATCG--G 937664 Query 147080 AGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGA 147139 ||||| ||||||||| ||||| || | || ||| || | || ||| | Sbjct 937663 TTGGCGTTTTGTTCCACATATCGTATTGTAAAACACCTTTGCTAACCGGTGATCCATCAT 937604 Query 147140 ACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGT 147199 | || || || || || ||||||||||| || || || | || ||||||| Sbjct 937603 ATGTTTCATATGGCCCATCAATCTCGGCCAATTCACAACTAGCTTCCAAGGCACCATAGT 937544 Query 147200 ATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATAC 147259 | || |||||| ||||| | ||||| | || || || || || || || || | Sbjct 937543 AAATCGTTTCGAAAATTTGCTGATTTAGTTTCATTGCCTCATCACTTTCATATGGAATTC 937484 Query 147260 GCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATGCTTTT 147319 ||| | | || |||||||| ||||| || || || | ||| | || ||||| || Sbjct 937483 GCATCAAAATGAATGCATCGGCTAAACCTTGAATTCCAATGCCAACCGGCCGATGACGTT 937424 Query 147320 CGTTGCTGCGCTTCGCG-CTCGCTATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGG 147378 |||| || | || | || |||| ||| | ||| |||||| || ||||| || Sbjct 937423 TGTTGGAACGTTCAGCTTCGGGCAATGG-ATAATAGTTAACATCAATGATTTTGTTCAGA 937365 Query 147379 TTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCTTCG 147438 || || || ||||| || ||| ||| | || || ||||| || || |||| || Sbjct 937364 TTTCGTGTAACGACTTTTGTGATTTCTTTCAACTTATCAAAATCGTATGTTTTGTCTGCG 937305 Query 147439 ACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCG 147498 ||| | ||| ||||| || || |||| ||| || || || | || || | Sbjct 937304 GT---TACAAACATGTTAACGGCTATCGATGCCAAATTACAAACAGCAATTTCATCAGAA 937248 Query 147499 TCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGC 147558 || | | || ||||||| || | || ||||||| ||| || | || || Sbjct 937247 CTTGTGAATTCAACAATTTCGGTACATAAATTACTGCATTGAATGGTACCAAGGTTCTGT 937188 Query 147559 TGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACT 147618 || || ||||| |||||||| ||||||||||| | |||||| ||| || || |||| | Sbjct 937187 TGGTTACTTTTACGATTGCAGGCGTCTTTGAATAACATGTATGGTGTTCCAGTTTCGATT 937128 Query 147619 TG 147620 || Sbjct 937127 TG 937126 >seq28 Length=2173237 Score = 129 bits (142), Expect = 6e-25 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||| | |||| || |||||||||||||||||| || ||||| |||||| Sbjct 1269988 AACCAAATGGAGTGTTGATTCCTTTTGAATGTTGTAGTCGGACAATGTACGACCATCTTC 1269929 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | |||||||| | | |||||| ||| ||||||||||| || || ||||| || || Sbjct 1269928 CAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCCTTGTCTTG 1269869 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||||| || | | ||| | ||| || | ||| || ||||||| || | || || Sbjct 1269868 GATTTTGGCCTTGACATTTTCGATAGTGTCTGACGGTTCGACTTCGAGAGTGATAGTCTT 1269809 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||| || || ||||| | ||||||||||||| Sbjct 1269808 ACCCGTGAGGGTTTTAACGAAAATCTGCATG 1269778 >seq17930 Length=2109152 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||||| |||| || ||||| || ||||| ||| || ||||| | Sbjct 1835522 CGCAATACCAAATGTAATGTTGATTCCTTTTGGATATTGTAATCGGACAATGTACGGCCA 1835463 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | |||||||||| | | || | ||| ||||| ||||| || ||||||||||| Sbjct 1835462 TCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGGTCTGGTGGAATGCCTTCTTTG 1835403 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| || | | ||| | || |||| ||||| ||||| | || | Sbjct 1835402 TCTTGGATTTTAGCCTTGACATTTTCGATTGTGTCGGATGGCTCGACTTCAAGTGTGATA 1835343 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || |||||||| | |||||| ||||| Sbjct 1835342 GTCTTGCCGGTTAGAGTTTTAACGAAAATTTGCAT 1835308 >seq193 Length=1219868 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | |||| |||||||||||||| |||||||||| ||||| | Sbjct 521699 CGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTATAGTCGCTCAAAGTACGACCA 521758 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | |||||||||| | | || | ||||||||| ||||| || || |||||||| Sbjct 521759 TCTTCCAATTGTTTACCGGCAAAAATCAAACGCTGTTGGTCTGGTGGAATTCCTTCTTTG 521818 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | ||| | || || | || || || || | || | Sbjct 521819 TCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCGACCTCCAAAGTGATG 521878 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||||| || |||| ||||| | ||||| |||||| Sbjct 521879 GTTTTTCCGGTCAATGTTTTCACAAAAATTTGCATG 521914 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | |||| ||||||||||||||||||||||||| ||||| | Sbjct 521015 CGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCTCAAAGTACGACCA 521074 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | |||||||| | | | || | || ||||||||||| || || || ||||| Sbjct 521075 TCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGGAATACCCTCTTTG 521134 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | ||| | || || | || || ||||| | || | Sbjct 521135 TCTTGGATCTTGGCCTTAACGTTTTCGATGGTGTCTGATGGTTCAACTTCCAAAGTGATG 521194 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||||| ||||| | ||||| ||||| Sbjct 521195 GTTTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 521229 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | |||| || || ||||||||||||||||||| ||||| Sbjct 521243 CGCAAGACCAAATGCAATGTTGATTCCTTCTGAATGTTGTAGTCGCTCAATGTACGACCG 521302 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | |||||||||| | || | ||||||||||||||| || || |||||||| Sbjct 521303 TCTTCCAATTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGAATACCTTCTTTG 521362 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | ||| | || || | || || ||||| | || | Sbjct 521363 TCTTGGATCTTGGCCTTAACGTTTTCGATGGTGTCTGATGGTTCAACTTCCAAAGTGATG 521422 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||||| ||||| | ||||| ||||| Sbjct 521423 GTCTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 521457 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||| | |||| |||||||||||||| |||||||||| ||||| ||||| Sbjct 521476 AACCAAATGCAATGTTGATTCTTTTTGAATGTTATAGTCGCTCAAAGTACGACCGTCTTC 521535 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | ||||||||||| | || | ||||||||||||||| || || |||||||| || Sbjct 521536 TAACTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCTTG 521595 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || || || | | ||| | || || | || || ||||| | || | || || Sbjct 521596 GATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCAACTTCCAATGTGATGGTCTT 521655 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||| ||||| | || || ||||| Sbjct 521656 GCCAGTCAATGTTTTGACAAAGATTTGCAT 521685 Score = 98.7 bits (108), Expect = 9e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | |||| ||||||||||||||||||||||||| ||||| | Sbjct 520301 CGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCTCAAAGTACGACCA 520360 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | |||||||| | | | || | || ||||||||||| || || || ||||| Sbjct 520361 TCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGGAATACCCTCTTTG 520420 Query 132029 TC 132030 || Sbjct 520421 TC 520422 Score = 98.7 bits (108), Expect = 9e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | |||| |||||||||||||| |||||||||| ||||| | Sbjct 520806 CGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTATAGTCGCTCAAAGTACGACCA 520865 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | |||||||| | | | || | || ||||||||||| || || |||||||| Sbjct 520866 TCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGGAATACCTTCTTTG 520925 Query 132029 TC 132030 || Sbjct 520926 TC 520927 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||| | |||| || ||||| || || |||||||||| ||||| |||||| Sbjct 520078 AACCAAATGCAATGTTGATTCCTTTTGGATATTATAGTCGCTCAATGTACGGCCATCTTC 520137 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | || || |||| | | || | ||||||||||||||| || || |||||||| || Sbjct 520138 CAATTGCTTGCCGGCAAAAATCAAACGCTGTTGATCTGGCGGAATACCTTCTTTGTCTTG 520197 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||||| || | | ||| | || || | || || || || | || | ||||| Sbjct 520198 GATTTTAGCCTTGACGTTTTCGATGGTGTCTGATGGTTCAACCTCCAAAGTGATGGTTTT 520257 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||| ||||| | |||||| ||||| Sbjct 520258 TCCGGTCAATGTTTTGACGAAAATTTGCAT 520287 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||| | |||| |||||||||||||| |||||| | || || ||||| Sbjct 520583 AACCAAATGCAATGTTGATTCTTTTTGAATGTTATAGTCGGATAAAGTGCGACCGTCTTC 520642 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | ||||||||||| | || | ||||||||||||||| || || |||||||| || Sbjct 520643 TAACTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCTTG 520702 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || || || | | ||| | || || | || || ||||| | || | ||||| Sbjct 520703 GATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCAACTTCCAATGTGATGGTTTT 520762 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||| ||||| | || || ||||| Sbjct 520763 TCCAGTCAATGTTTTGACAAAGATTTGCAT 520792 >seq6000 Length=1279 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | |||| || ||||| || || |||||||||| ||||| | Sbjct 1164 CGCAAGACCAAGTGCAATGTTGATTCCTTTTGGATATTATAGTCGCTCAATGTACGGCCA 1223 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 ||||| | || || |||| | | || | ||||||||||||||| ||||| ||||| Sbjct 1224 TCTTCCAATTGCTTGCCGGCAAAAATCAAACGCTGTTGATCTGGTGGTATACCTTC 1279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476465386761000