Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq317 120 3e-22 seq193 111 1e-19 seq29 100 3e-16 seq17930 84.2 2e-11 >seq317 Length=2337800 Score = 120 bits (132), Expect = 3e-22 Identities = 365/551 (66%), Gaps = 36/551 (7%) Strand=Plus/Minus Query 110036 TATTCGCCTACACGTTTTTCGAAAAAATTAGTTTTGCCCTCGAGAGATATATTATTCATA 110095 |||||||| ||||||||||| || |||||||||||||| | | || || || | |||| Sbjct 1453418 TATTCGCCGACACGTTTTTCAAAGAAATTAGTTTTGCCTTGTAATGAAATGTTTTCCATA 1453359 Query 110096 AACTCGAAAGGA---TTGACAGTGTTAAAGTGTTTGTCGTAGCCCAATTCGAATAGCAAT 110152 || | || ||| ||||| || || || ||| ||||||||||| | ||| Sbjct 1453358 AATTTAAATGGATTCTTGACCATGAATAATGGT---TCGCAGCCCAATTCGCTCAACAAA 1453302 Query 110153 CGATCCGCCACAAATTCAATATACTCGCACATGGACTGTAC-GTTCATGCCTAACATGGC 110211 ||||| || ||||||||||| ||| ||||| | | || |||||||| ||||| | Sbjct 1453301 CGATCGGCAACAAATTCAATGTACGTACACAT-ATCAGCACAATTCATGCCCAACATTGA 1453243 Query 110212 AACTGGTAGAGCGGTAGTaaaaaaaTCCTTTTCAATGTCGACAGCCTCTACGAACATACT 110271 |||||| | || || ||||| |||||||||||| || || || | | ||| | Sbjct 1453242 AACTGGCAATGCAACCGTTAAAAATTCCTTTTCAATGCGAACCGCTTCAGCAATAATATT 1453183 Query 110272 --CAACACCTGGCTCTTATGAAGCTTGTTCTTTTCGGGAATATATCTATTATAGTAGAGG 110329 |||| | |||| ||| | | |||| || |||| || | | || | Sbjct 1453182 GCGTACAC---GTTCTTGTGATGGT-----TTTTGTACAACATATTTA-AACATTAAA-- 1453134 Query 110330 CAGGCAAAATCAGTGTGTAATCCTTCATCTCTAGAAATGAGTTCGTTGCTGTATGTCAAA 110389 || ||||||||| || | || ||||| | ||||| | ||| ||| |||| ||| Sbjct 1453133 CATGCAAAATCACAATGCATGCCCTCATCACGTGAAATTAATTCATTGGAAAATGTTAAA 1453074 Query 110390 CCGGG---TAGAGCCCCTTTTTTGTGTCTTTTATGTAGTAGATTGCGGCAAAACTTCCG- 110445 ||||| |||| | | ||||| || | | ||||| ||||| || ||| Sbjct 1453073 CCGGGCATTAGACCACGTTTTT----TCAACCAAAAAATAGAT----GCAAAGCTACCGC 1453022 Query 110446 -GAAAAATACTCCTTCGACGATTGCAAAAGCGACCATGCGCTCGGCAAATGTAGCAGATT 110504 ||||| | ||||| || |||||| || || | || || ||||||| || | || Sbjct 1453021 TAAAAAAAATCCCTTCAACAGCTGCAAATGCAACAACACGTTCACCAAATGTGGCCGTTT 1452962 Query 110505 TATTTTCTATCCACTTTTGAGCCCAAGCCGCCTTCCGTTTAACAC-TATCGATGTGCTCG 110563 | | | ||||| | | |||||| | |||||| |||||||| | | | || ||| Sbjct 1452961 TGCTGCCAATCCATTGTAATGCCCAATCGGCCTTCTTTTTAACACATGGCAACGT-TTCG 1452903 Query 110564 ATGGCATTCAA 110574 |||||||| || Sbjct 1452902 ATGGCATTAAA 1452892 >seq193 Length=1219868 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| |||||||| || || ||| | ||||| | ||||| ||| ||| | Sbjct 521229 ATGCAAATTTTTGTCAAAACATTGACTGGCAAAACCATCACTTTGGAAGTTGAA-CCATC 521171 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || ||||| | || || || || || ||||||||||| || || ||||| Sbjct 521170 AGACACCATCGAAAACGTTAAGGCCAAGATCCAAGACAAAGAGGGTATTCCACCAGATCA 521111 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || | |||| | || |||||| | ||||||| | | | | | ||||| ||||| Sbjct 521110 ACAACGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTGAGCGACTACAA 521051 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||||||||||||| || | ||||| || || Sbjct 521050 CATTCAAAAAGAATCAACTTTGCATTTGGTATT 521018 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||| |||||||| ||||||||| | ||||| | || |||||| ||| Sbjct 521914 CATGCAAATTTTTGTGAAAACATTGACCGGAAAAACCATCACTTTGGAGGTCGAA-CCAT 521856 Query 25234 C-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATC 25292 | || || || || | || || || || || ||||| || || || || || | Sbjct 521855 CAGACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATTCCACCAGACC 521796 Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACA 25352 | || | | |||| | ||| |||||| | ||||||| | | | | | ||||| || | Sbjct 521795 AACAGCGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGTCGTACTTTGAGCGACTATA 521736 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 | |||||||||||||| || | ||||| || || Sbjct 521735 ACATTCAAAAAGAATCAACTTTGCATTTGGTATT 521702 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 || ||||||||||| || || ||||| ||| || | |||| | || |||||| | ||| Sbjct 520422 GACAAAGAGGGTATTCCACCAGATCAACAACGATTGATTTTTGCTGGTAAACAATTGGAA 520363 Query 25328 GATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||| | | | | | ||||| ||||| |||||||||||||| || | ||||| || || Sbjct 520362 GATGGTCGTACTTTGAGCGACTACAACATTCAAAAAGAATCAACTTTGCATTTGGTATT 520304 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| |||||||| || |||||| | ||||| | ||||| ||| ||| | Sbjct 520792 ATGCAAATCTTTGTCAAAACATTGACTGGAAAAACCATCACATTGGAAGTTGAA-CCATC 520734 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || || || || || ||||| ||||| || || ||||| Sbjct 520733 AGACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCA 520674 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 || | | |||| || ||| ||||| | ||||| | | | | | | ||| || || Sbjct 520673 ACAGCGTTTGATTTTCGCCGGTAAACAGTTAGAAGACGGTCGCACTTTATCCGACTATAA 520614 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||||||||||||| || | ||||| || Sbjct 520613 CATTCAAAAAGAATCAACATTGCATTTGGT 520584 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| |||||||| || || || | ||||| | ||||| ||| ||| | Sbjct 521685 ATGCAAATCTTTGTCAAAACATTGACTGGCAAGACCATCACATTGGAAGTTGAA-CCATC 521627 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || || || || || ||||| ||||| || || ||||| Sbjct 521626 AGACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCA 521567 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 || | | |||| || ||| ||||| | ||||| | | | | | | ||||| || || Sbjct 521566 ACAGCGTTTGATTTTCGCCGGTAAACAGTTAGAAGACGGTCGTACTTTGAGCGACTATAA 521507 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||||||||||||| || | ||||| || Sbjct 521506 CATTCAAAAAGAATCAACATTGCATTTGGT 521477 >seq29 Length=2096867 Score = 100 bits (110), Expect = 3e-16 Identities = 697/1102 (63%), Gaps = 36/1102 (3%) Strand=Plus/Minus Query 136639 ACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTTT 136698 || || ||||| |||| ||| ||||| ||| ||| | || ||| ||||| || || || Sbjct 938192 ACAGTAAATTGAATTGGATTTGCGGCTGGTCGAGTGCGCAAATAATACATTCCTGTTTTG 938133 Query 136699 AAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGCC 136758 | ||| | ||| | |||| ||| || || | || || || | || |||||| Sbjct 938132 AGACCGGCTTTCCATGCATAAAAATGAATCGAAGTCATTTTTGCGTATGTTGGTTCGGCC 938073 Query 136759 ACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTTC 136818 || | ||| | |||||| || ||||||||| | | || || || || ||||| || Sbjct 938072 ACATGCAAATTGAACGATTGACTTTGATCGATGAACGCACCCCGATCAGCAGCCATATTG 938013 Query 136819 AATAGTACTTTTTGCTTA-ATTTCCCAAGCGGTTTTAAAGAGCTCCTTGACATTGGGCGG 136877 | | || |||| | | ||||||||| ||||||| | | || | | | || Sbjct 938012 A-TGGTTGTTTTAACAGATATTTCCCAAACGGTTTTGTATAAATCGCGAATTTCTTGTGG 937954 Query 136878 AATTTCATCGATATTCTGTACAGATCCGTTGTTTTTGATGATTT---TCATCATGAGATC 136934 |||| |||||| || | || || | | ||||||| | ||||| ||| Sbjct 937953 AATTCGTGTGATATTTTGAATTGAACCATAATCGGCAATGATTTCGTTTTTCATGTCATC 937894 Query 136935 AGTCGAGTATACGTTGCTCTCTATGAGTTTATCGACGAGATGCTGATTTACTACTTGATA 136994 ||| ||| | | | || | | | | || ||||| ||||| || |||||| | Sbjct 937893 -GTCCCACATA--TCGATTTCGGTCAAATCTTTGATCAGATGATGATTGACCACTTGAAA 937837 Query 136995 TTCGCCCGATAGCACTCTGCGTACGTACAGATTACTAGTGAACGGCTCGAACGATTCGTT 137054 ||| || || || || | ||| || | ||| ||| | || ||||| ||||| || Sbjct 937836 TTCACCGGAAAGAACACGGCGATTATAAATATTTGATGTGTAAGGTTCGAATGATTCATT 937777 Query 137055 GTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAACAATGAATTCCG 137114 ||| || | ||| || || || | ||||||||||| ||||| || |||||||| || Sbjct 937776 GTTGCCGAGAATTTGAGCCGTACTAGCTGTCGGCATTGGAGCGAGTAATAATGAATTTCG 937717 Query 137115 TAAACCGTGTACGGCCAATTGTTG-CTTGAGCTCTTTCCAGTTCCACAGATTGTTCGATT 137173 || ||| ||| | ||||| | | || | | ||| ||||| | | ||| || Sbjct 937716 TACACCATGTTTAG-CAATTTTCGTTTTTAATGCAGCCCAATTCCATAAA----TCGGTT 937662 Query 137174 GG-GTTATATTCCACAAATCAAACTGCAAAAGTCCGCGACTTGCAGGACTTTCTGCATAA 137232 || ||| | ||||||| ||| | || |||| || || | || | | |||| Sbjct 937661 GGCGTTTTGTTCCACATATCGTATTGTAAAACACCTTTGCTAACCGGTGATCCATCATAT 937602 Query 137233 GAATCATATGTTCCGTGCAGTTTC-GCCAGTTCAATACTCTGGACTAGTGCGCCATAGTA 137291 | ||||||| || | || | || |||| |||| ||| | | || |||||||| Sbjct 937601 GTTTCATATGGCCCAT-CAATCTCGGCCAATTCACAACTAGCTTCCAAGGCACCATAGTA 937543 Query 137292 AATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTCTTGGCTGTCGTAGGGCATATC 137351 ||| |||||| | |||| ||| | || | || || | || || || || || Sbjct 937542 AATCGTTTCGAAAATTTGCTGATTTAGTTTCATTGCCTCATCACTTTCATATGGAATTCG 937483 Query 137352 CAATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGATACCGATAGGTC--TG-TGTTT 137408 || | | ||| ||||| || | |||||||| || || || | || | || |||| Sbjct 937482 CATCAAAATGAATGCATCGGCTAAACCTTGAATTCCAATGCCAACCGGCCGATGACGTTT 937423 Query 137409 AAAATTTGATATTTGAGC-GCTAACAAGCGGATAAAAGTTTGCGTCTATAATTCTATTGA 137467 || || || ||| | ||| |||||| |||| | || || ||| | || | Sbjct 937422 ---GTTGGAACGTTCAGCTTCGGGCAA-TGGATAATAGTTAACATCAATGATTTTGTTCA 937367 Query 137468 GATTGTTAGTAACGACTCTGGACACTTTGTAGAGCAATTCGAAATCGAAGCTTTTAGACT 137527 |||| ||||||||| | | | || | | | || |||||| | |||| | || Sbjct 937366 GATTTCGTGTAACGACTTTTGTGATTTCTTTCAACTTATCAAAATCGTATGTTTT-GTCT 937308 Query 137528 GTTTGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTTGCATACGGCCGTTTCTGTA- 137586 | |||| |||| | || ||||| || || || || || || || || |||| | Sbjct 937307 G-CGGTTA-CAAACATGTTAACGGCTATCGATGCCAAATTACAAACAGCAATTTCATCAG 937250 Query 137587 ---TTGTCGCTGTATTGTACAATTTCGGCGCAAAGATTGCTGTTTCGGATCACTCCCAAA 137643 ||| || ||| |||||||||| || | ||| ||| | | || || | Sbjct 937249 AACTTG----TGAATTCAACAATTTCGGTACATAAATTACTGCATTGAATGGTACCAAGG 937194 Query 137644 TTCTTTTGATTGTTTTTCTCGTTGACGTGATCTTTATATATCATATACGGAGTTCCGGTT 137703 |||| ||| || |||| ||| | ||||| ||| ||| || || ||||| ||| Sbjct 937193 TTCTGTTGGTTACTTTTACGATTGCAGGCGTCTTTGAATAACATGTATGGTGTTCCAGTT 937134 Query 137704 TCGACTTGAGTCTCAACAATTT 137725 |||| ||| | || |||||||| Sbjct 937133 TCGATTTGTGCCTGAACAATTT 937112 >seq17930 Length=2109152 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/218 (70%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || |||||| | || || ||||| ||||||| || | ||||| | |||||||| ||| Sbjct 1835305 AAGATGCAAATTTTCGTTAAAACTCTAACCGGCAAGACTATCACACTTGAAGTCGA-GCC 1835363 Query 25232 AAC-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | | || || ||||| | || || ||||| || ||||| || || || || || Sbjct 1835364 ATCCGACACAATCGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGCATTCCACCAGA 1835423 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGAT 25348 || ||| | | |||| | ||| |||||| | ||||||| | | |||| |||| Sbjct 1835424 CCAACAACGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGCCGTACATTGTC--CGAT 1835481 Query 25349 TACAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||||||| ||||| ||||| || | ||||| || || Sbjct 1835482 TACAATATCCAAAAGGAATCAACATTACATTTGGTATT 1835519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444958228932000