Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq193 109 4e-19 >seq193 Length=1219868 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||| ||||||||||||||||| ||||| || ||||| ||||| Sbjct 521229 ATGCAAATTTTTGTCAAAACATTGACTGGCAAAACCATCACTTTGGAAGTTGAACCATCA 521170 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | | | | || || || || |||||||| || | || |||||| Sbjct 521169 GACACCATCGAAAACGTTAAGGCCAAGATCCAAGACAAAGAGGGTATTCCACCAGATCAA 521110 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | |||| ||| || |||||||| |||||| | ||| || |||| |||||| Sbjct 521109 CAACGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTGAGCGACTACAAC 521050 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTG 106472 || ||||||||||| || | ||||| |||||| Sbjct 521049 ATTCAAAAAGAATCAACTTTGCATTTGGTATTG 521017 Score = 82.4 bits (90), Expect = 6e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 106353 GACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAA 106412 |||||||| || | || ||||||||| | | |||| ||| || |||||||| ||| Sbjct 520422 GACAAAGAGGGTATTCCACCAGATCAACAACGATTGATTTTTGCTGGTAAACAATTGGAA 520363 Query 106413 GATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||| | ||| || |||| |||||||| ||||||||||| || | ||||| |||||| Sbjct 520362 GATGGTCGTACTTTGAGCGACTACAACATTCAAAAAGAATCAACTTTGCATTTGGTATTG 520303 Score = 82.4 bits (90), Expect = 6e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 106353 GACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAA 106412 ||||||||||| | || ||||||||| | | |||| ||| || |||||||| ||| Sbjct 520927 GACAAAGAAGGTATTCCACCAGATCAACAACGATTGATTTTTGCTGGTAAACAATTGGAA 520868 Query 106413 GATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||| | ||| || |||| || ||||| ||||||||||| || | ||||| |||||| Sbjct 520867 GATGGTCGTACTTTGAGCGACTATAACATTCAAAAAGAATCAACTTTGCATTTGGTATTG 520808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402209589480800