Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq317 86.0 9e-11 >seq317 Length=2337800 Score = 86.0 bits (94), Expect = 9e-11 Identities = 121/169 (72%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 1455865 TGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGAT 1455924 ||| ||| || || || ||||||| ||||| || | ||||||||| || || |||| Sbjct 1452668 TGAACGAAGATGAACGTAATTTCATAAAGCATGTGTTGGCCTTTTTT-GCTGCATCCGAT 1452726 Query 1455925 GGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCA 1455984 |||||||| || || | | | || |||| ||||||| ||| | | || ||| Sbjct 1452727 GGCATCGTCAATGAAAATTTAGTTGAACGTTTTAGCCAAGAGGTTCAAGTAACTGAAGCA 1452786 Query 1455985 CGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAA 1456033 ||||| ||||| || || || || ||||| ||||| | |||||||||| Sbjct 1452787 CGTTTCTTTTATGGCTTTCAAATGGCCATTGAAAATGTGCACTCTGAAA 1452835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175450541264950