Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq193 122 8e-23 seq17930 104 2e-17 seq28 95.1 1e-14 >seq193 Length=1219868 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| |||||||| || || || ||||||||||| || ||| | Sbjct 521687 CCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTATAGTCGCTC 521746 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || |||| || ||||| ||||| ||||| ||||| ||||| | ||| Sbjct 521747 AAAGTACGACCATCTTCCAATTGTTTACCGGCAAAAATCAAACGCTGTTGGTCTGGTGGA 521806 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | || ||||| |||||| ||| | | || | | ||||| | ||| ||| Sbjct 521807 ATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCGACC 521866 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| ||||| || ||||| ||||||||||| || ||||| Sbjct 521867 TCCAAAGTGATGGTTTTTCCGGTCAATGTTTTCACAAAAATTTGCAT 521913 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| |||||||| || || || |||||||||||||| ||| | Sbjct 521003 CCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCTC 521062 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || |||| || ||||| ||||| ||||| || || || || | ||| Sbjct 521063 AAAGTACGACCATCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGGA 521122 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||| ||||| |||||| ||| | || | | ||||| | ||| || Sbjct 521123 ATACCCTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCGATGGTGTCTGATGGTTCAACT 521182 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| ||||| || ||||| ||||| ||||| || ||||| Sbjct 521183 TCCAAAGTGATGGTTTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 521229 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| |||||||| || || ||||| ||||||||||| ||| | Sbjct 521231 CCACCACGAAGACGCAAGACCAAATGCAATGTTGATTCCTTCTGAATGTTGTAGTCGCTC 521290 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || |||| |||| || ||||| || || ||||| ||||| || || | ||| Sbjct 521291 AATGTACGACCGTCTTCCAATTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGA 521350 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | || ||||| |||||| ||| | || | | ||||| | ||| || Sbjct 521351 ATACCTTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCGATGGTGTCTGATGGTTCAACT 521410 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || ||||| ||||| ||||| || ||||| Sbjct 521411 TCCAAAGTGATGGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 521457 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||||| || || || ||||||||||| || |||| Sbjct 520566 CCACCACGAAGACGGAGAACCAAATGCAATGTTGATTCTTTTTGAATGTTATAGTCGGAT 520625 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || |||| || | ||| ||||| || || ||||| ||||| || || | ||| Sbjct 520626 AAAGTGCGACCGTCTTCTAACTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGA 520685 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | || ||||| |||||| ||| | | || | | ||||| | ||| || Sbjct 520686 ATACCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCAACT 520745 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| ||||| || ||||| ||||| ||||| || ||||| Sbjct 520746 TCCAATGTGATGGTTTTTCCAGTCAATGTTTTGACAAAGATTTGCAT 520792 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||||| || || || ||||||||||| || ||| | Sbjct 521459 CCACCACGAAGACGGAGAACCAAATGCAATGTTGATTCTTTTTGAATGTTATAGTCGCTC 521518 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || |||| || | ||| ||||| || || ||||| ||||| || || | ||| Sbjct 521519 AAAGTACGACCGTCTTCTAACTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGA 521578 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | || ||||| |||||| ||| | | || | | ||||| | ||| || Sbjct 521579 ATACCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCAACT 521638 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || ||||| ||||| ||||| || ||||| Sbjct 521639 TCCAATGTGATGGTCTTGCCAGTCAATGTTTTGACAAAGATTTGCAT 521685 >seq17930 Length=2109152 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| ||||||||||| || |||||||| || |||||||||| | Sbjct 1835534 CCACCACGAAGACGCAATACCAAATGTAATGTTGATTCCTTTTGGATATTGTAATCGGAC 1835475 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || |||| || ||||| ||||| ||||| || || ||||| | ||| Sbjct 1835474 AATGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGGTCTGGTGGA 1835415 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || || ||||| ||| || ||| | | || | | |||||| | || || Sbjct 1835414 ATGCCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCGATTGTGTCGGATGGCTCGACT 1835355 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || || || | |||||| || || || ||||| Sbjct 1835354 TCAAGTGTGATAGTCTTGCCGGTTAGAGTTTTAACGAAAATTTGCAT 1835308 >seq28 Length=2173237 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||||| | || ||||||||||||||||| |||| | Sbjct 1270005 CCACCACGAAGACGGAGAACCAAATGGAGTGTTGATTCCTTTTGAATGTTGTAGTCGGAC 1269946 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || |||| || ||||| ||||| || || || || || || | ||| Sbjct 1269945 AATGTACGACCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGA 1269886 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||| ||| || ||| | | || | | ||||| || ||| || Sbjct 1269885 ATTCCTTCCTTGTCTTGGATTTTGGCCTTGACATTTTCGATAGTGTCTGACGGTTCGACT 1269826 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || |||||||| | ||||| || || |||||||| Sbjct 1269825 TCGAGAGTGATAGTCTTACCCGTGAGGGTTTTAACGAAAATCTGCAT 1269779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450655685333000