Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_026601.1 Length=37238 Score E Sequences producing significant alignments: (Bits) Value seq18687 221 3e-53 seq4505 91.5 4e-14 >seq18687 Length=1155 Score = 221 bits (244), Expect = 3e-53 Identities = 352/504 (70%), Gaps = 11/504 (2%) Strand=Plus/Minus Query 21049 AGTGGATCGGTCAGCGTGTCATCAAGGACATGGCGGCCCAGGGCTACCAGATCACCAACA 21108 |||||||||| | ||||| ||||| |||||||||| || |||||| |||||| |||| Sbjct 1155 AGTGGATCGGCGACCGTGTGCTCAAGAACATGGCGGCGCACGGCTACTCGATCACTAACA 1096 Query 21109 AGCTCTTCGAATCGACCGTGGGCGTAAAACGTACCGACATCGAGGACGACAACCTCGGCG 21168 | ||||| ||| | || ||||| || | |||||| |||||| | |||||| Sbjct 1095 AAAAATTCGAGTCGTCGGTAGGCGTTCCTCGCGACTCCATCGAAGACGACGAAATCGGCG 1036 Query 21169 TCTACGGACCGCTCATGCAGGAAATGGGGCGCGCTGCCGGCGCGCATCCCGACGAGCTGG 21228 ||||| ||||| | || ||||| || || || |||| || |||||||| |||| Sbjct 1035 TCTACAAGCCGCTGTTCGCCGAGATGGGTCGAGCCTCCAGCGCCCACCCCGACGAACTGG 976 Query 21229 TCTTCGCCCTGCTCAAGGCCGGCAACGCCAATCTCTGCTACGACGGTCAAAACTTCTTCG 21288 | || | |||||| || ||||| | | | ||||||||||| ||||||||||||| Sbjct 975 TGTTTGGCCTGCTGAAAGCCGGACTGACTACGCAGTGCTACGACGGCCAAAACTTCTTCG 916 Query 21289 ACACCGATCACCCGGTCTATCCGAACGTGGATGGCACCGGCACGGCGACCACCGTTAGCA 21348 || |||||||||| ||||| || | || |||||||| || || | || |||| Sbjct 915 ACGCCGATCACCCTGTCTACCCAGAGACCGACGGCACCGGTACTGCTGTATCGGTCAGCA 856 Query 21349 ACCTGTTC-GCGCCGGCCGCTGATCCGGGGGCGGCCTGGTATCTGCTCGACACCAGCCGC 21407 || | | | |||| | || ||||||||||||||||||| ||| ||| Sbjct 855 AC---TACAAAGACGGC-------ACCGGCCCGGCCTGGTATCTGCTCGATGTCAGTCGC 806 Query 21408 AGCCTCAAGCCGTTGATCTACCAGGAGCGCATGAAGCCGTCGTTCACTTCGATGACCAAG 21467 |||||||| | |||| |||| || || | ||| | ||||||| Sbjct 805 GCAATCAAGCCGATCATCTTCCAGACCCGTCGCAACTATGCCCTCAAAGCAATGACCAGC 746 Query 21468 GAAGACGACGAGCAGGTCTTCATGGCCGACGAGTACCGCTACGGCGTGCGCTCCCGCTGC 21527 ||||| |||||||| |||||| ||||||||||||||| ||||| | ||||| | Sbjct 745 ATGGACGATGAGCAGGTGTTCATGCGCGACGAGTACCGCTATGGCGTCGACGCCCGCGTC 686 Query 21528 AATGTCGGATTCGGTTTCTGGCAA 21551 ||||| || ||||| ||||||||| Sbjct 685 AATGTGGGTTTCGGCTTCTGGCAA 662 >seq4505 Length=835 Score = 91.5 bits (100), Expect = 4e-14 Identities = 220/333 (66%), Gaps = 0/333 (0%) Strand=Plus/Minus Query 288 TAGGCCGAATTAGCGCTAATGATCGCTAGACCGCCATTGATTTGCCGCTGGATTCGCTTG 347 || |||| || ||||| |||| | | ||||| | ||| || || || | |||||| Sbjct 426 TAAGCCGTGTTGGCGCTGATGACCAAGACCCCGCCGTCGATCTGGCGTTGCAGCCGCTTG 367 Query 348 GCGTATAGGTGGTCATCCAACCGAATGACGTAGATAGCCTCGTCGCGGACCTCGCCGCAG 407 ||||| ||| ||||||||| || || || || | |||||| | ||| | | | Sbjct 366 GCGTACAGGAGGTCATCCAGGCGTATCACATAAAACGCCTCGCCCTGGATGGTGTTCCGG 307 Query 408 CTGTGGTCAATCATCACCGTATCACCATCGCTCAACAGCGGCTCCATTGAGTCACCGCCG 467 | || | |||||| ||||| || || | | | |||||| ||||||| || | Sbjct 306 GAAAGATCCACCATCACGGTATCGCCGTCCTTTAGAAACGGCTCGTTTGAGTCGCCATCC 247 Query 468 ATGCGAACGGCTGACATATTCGCTATCTCCAGACCTTGCTTCCGCAAGCTGTAGCGAGTG 527 | || || |||| | | || | ||| |||| ||| |||||||||| |||| Sbjct 246 ACCCGCACCGCTGCGAGCTGCGACGCTTGCAGCCCTTTTTTCTGCAAGCTGTATTTAGTG 187 Query 528 AACGCCAGCTTGGCCAAGGTCCGCGCGCCCTCCATCCAGGAACCGTGGCCAGCACTCACC 587 || || ||| | | || | | || ||||| || |||| | ||||||||| || | Sbjct 186 AAGGCAAGCATTGTCAGGATGCGAGCGCCATCGCTCCAAGCACCGTGGCCCTGGCTGATT 127 Query 588 CGCGCGTCGTAGAGGGGTACGTAGGCGTAGGTG 620 | ||||| || || || || ||||||||| || Sbjct 126 CTGGCGTCATACAGCGGAACATAGGCGTAGATG 94 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119005402140000