Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq317 269 2e-67 seq47 188 6e-43 seq33 95.1 1e-14 >seq317 Length=2337800 Score = 269 bits (298), Expect = 2e-67 Identities = 577/841 (69%), Gaps = 41/841 (5%) Strand=Plus/Plus Query 43751 GCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGG 43810 ||| | || ||||||||||||| ||||||||||| ||||| || || | | |||||| Sbjct 1452598 GCAGAAGCATCATTTTGGACAGTTGAAGAAGTTGACTTGACAAAGGATATGGATCATTGG 1452657 Query 43811 ATTGCATTAAAACCAC--AAGAAAAAC---ATTTTATATCTTTGGTTTTGGCGTTTTTTG 43865 | || ||||| | |||| ||| |||| ||| || ||||| ||||||| Sbjct 1452658 AA--CAATAAAATGAACGAAGATGAACGTAATTTCATAAAGCATGTGTTGGCCTTTTTTG 1452715 Query 43866 CTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAAT 43925 |||| ||| || || |||||||||||||| ||| || ||| ||||| |||||| Sbjct 1452716 CTGCATCCGATGGCATCGTCAATGAAAATTTAGTTGAACGTTTTAGCCAAGAGGTTCAAG 1452775 Query 43926 TACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAA 43985 || | |||||||| | |||||||| |||||||| ||||| |||||| | || || |||| Sbjct 1452776 TAACTGAAGCACGTTTCTTTTATGGCTTTCAAATGGCCATTGAAAATGTGCACTCTGAAA 1452835 Query 43986 TGTACAGTCTTCTGATAGA----TACGTACATCAAAGATGGGCACGAGAAGCATCGATTG 44041 |||||||||| | ||| | || | || | | |||| | || || ||| Sbjct 1452836 TGTACAGTCTATTAATACAACAGTATGCACGT-GACGATG---AAGAACGTAATTTTTTG 1452891 Query 44042 TTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATG 44100 |||||||| || ||||| | || || | ||||| | || || || ||||| | |||| Sbjct 1452892 TTTAATGCCATCGAAACGTTGCCATGTG-TTAAAAAGAAGGCCGATTGGGCATTACAATG 1452950 Query 44101 GAT---AAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGG 44157 ||| | || | | ||||| ||||| |||| || ||||||| ||| ||||| Sbjct 1452951 GATTGGCAGCAAAACGGCCACATTTGGTGAACGTGTTGTTGCATTTGCAGCTGTTGAAGG 1453010 Query 44158 CATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCC 44217 ||||| ||| || ||||| | || |||||||| || ||||| ||| | ||||| Sbjct 1453011 GATTTTTTTTAGCGGTAGCTTTGCATCTATTTTTTGGTTGAAAAAACGTGGTCTAATGCC 1453070 Query 44218 TGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGC 44277 || || || ||||| ||||| ||||| |||||||| ||| | ||||| |||||||| Sbjct 1453071 CGGTTTAACATTTTCCAATGAATTAATTTCACGTGATGAGGGCATGCATTGTGATTTTGC 1453130 Query 44278 TTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAG-ACAATTAC-AGAT 44335 || || | || |||| | | | | || || ||| ||| || ||| || Sbjct 1453131 ATGTTTAATGTTTAAATATGTTGTA---CAAAAACCATCA--CAAGAACGTGTACGCAAT 1453185 Query 44336 ATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACC--TGTAA 44393 ||| ||| || || || || ||| | |||||| | || ||||| || | | | Sbjct 1453186 ATTATTGCTGAAGCGGTTCGCATTGAAAAGGAATTTTTAACGGTTGCATTGCCAGTTTCA 1453245 Query 44394 ATTTAATAGGAATGAA-TGAACT--TTTGATGAACCAATATATTGAATACATTGCAGATC 44450 || | | || ||||| || || | || || || || ||||||| |||| |||| Sbjct 1453246 ATGT--TGGGCATGAATTGTGCTGATATG-TGTAC--GTACATTGAATTTGTTGCCGATC 1453300 Query 44451 GTTTACTTTTGGAACTGGGTTGCGATAAACACTAT--ATTGTACAAAACCCGTTTGATTT 44508 |||| | ||| |||| |||| || || ||| || || | || || ||| | || Sbjct 1453301 GTTTGTTGAGCGAATTGGGCTGCG--AACCATTATTCATGGTCAAGAATCCATTTAAATT 1453358 Query 44509 TATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATA 44568 ||||||||| ||||| || |||||||||| || || ||||||||||| || || ||||| Sbjct 1453359 TATGGAAAACATTTCATTACAAGGCAAAACTAATTTCTTTGAAAAACGTGTCGGCGAATA 1453418 Query 44569 T 44569 | Sbjct 1453419 T 1453419 >seq47 Length=1394878 Score = 188 bits (208), Expect = 6e-43 Identities = 480/729 (66%), Gaps = 6/729 (1%) Strand=Plus/Minus Query 19216 CCAAATTGGAATGTGAAAGACATGCAAATTGGAGGATTGAGTAAAGAGTTTTCTGAAATC 19275 |||| || ||| | |||| ||| |||||| || || || || || || ||| Sbjct 1267293 CCAAGTTTCAATTTCAAAGCTATGGGAATTGGTGGTTTAGATACGGAATTCAGTGCAATT 1267234 Query 19276 TTTCGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGATGT 19335 |||||| | ||||||| || ||||| || | |||| | || ||||||| || || Sbjct 1267233 TTTCGTCGTGCATTTGCATCTCGTGTGTTCCCACCAGAATTGGTTGAACAATTAGGTTGC 1267174 Query 19336 AAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCG 19395 || || ||| || |||| || ||||| || || || ||||||||| || || || Sbjct 1267173 AAGCACGTTAAAGGTATTTTACTATATGGTCCTCCTGGAACTGGAAAAACCTTGATGGCT 1267114 Query 19396 AGAGAACTTAGTAAATTACTTACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATC 19455 | || | ||||| | | | | || || ||||| || ||||| |||| Sbjct 1267113 CGTCAAATCGGTAAAATGTTGAATGCTCGTGAGCCAAAGATTGTCAACGGTCCACAAATT 1267054 Query 19456 TTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAA 19515 | | || ||||| ||| |||| |||| ||||| || | || ||||| || ||||| Sbjct 1267053 CTCGACAAGTATGTCGGTGAATCAGAAGCGAATGTTCGCAGGTTATTTGCCGATGCTGAG 1266994 Query 19516 GAAGAACAAAAACGTTTAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTG 19575 |||||| | |||||||| || | || ||| || || || || ||| | ||||| | Sbjct 1266993 GAAGAAGAGAAACGTTTGGGCCCGAACAGTGGCTTACATATAATTATATTTGATGAGATC 1266934 Query 19576 GACGCAATCTGTAAGCAAAGAGGTTC---TGGTGTAAA---TGGAGTACATGACACTGTT 19629 || || || |||||| | ||||| || || || |||||| ||||| || ||| Sbjct 1266933 GATGCCATTTGTAAGGCTCGTGGTTCAGTTGCTGGCAACAGTGGAGTTCATGATACGGTT 1266874 Query 19630 GTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATT 19689 || |||||| | || | ||| | || |||||| | ||| ||||||||||| | || || Sbjct 1266873 GTTAATCAATTGCTTGCTAAAATCGATGGTGTTGAACAATTGAATAATATTCTTGTGATC 1266814 Query 19690 GGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAA 19749 || ||||| ||| | | || | || || || || | || || ||||| || || Sbjct 1266813 GGAATGACGAATCGTCGTGATATGATTGATGAGGCATTGATGCGTCCAGGTCGTTTAGAG 1266754 Query 19750 ATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACAT 19809 | | || ||||| ||||| ||||| |||| || ||||| | || || ||| Sbjct 1266753 GTTCAAATGGAAATCGGTTTACCGAATGAAAGTGGCCGAACACAAATTCTTAATATTCAT 1266694 Query 19810 ACATCAACCATGCGACAAAATAACCTTTTAAATGACGATGTAGATCTAGAAGAAATTGCA 19869 ||| | ||||| || || | ||| |||||| || | ||||| | || Sbjct 1266693 ACAGCTCGAATGCGTGAATTCAAAAAAATCAATCCCGATGTTAATATCCAAGAATTGGCT 1266634 Query 19870 GCGGCTACCAAAAACTATAGCGGCGCAGAACTTGAGGGATTAGTGAGGGCCGCCCAATCA 19929 || || || || | ||||| ||||||||||| || ||||| | || || |||||| Sbjct 1266633 GCAAAGACGAAGAATTTCAGCGGTGCAGAACTTGAAGGTTTAGTTCGTGCAGCACAATCA 1266574 Query 19930 ATTGCAATG 19938 | ||| ||| Sbjct 1266573 ACTGCGATG 1266565 >seq33 Length=1400293 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/207 (71%), Gaps = 1/207 (0%) Strand=Plus/Minus Query 41072 GTTATGTC-AGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAG 41130 ||| |||| | || |||||| | |||||||| ||||||||||||||||| | |||| Sbjct 741786 GTTTTGTCCAATTCTACGTTGCTGACGGTGAACTATCATGTCAATTGTATCAGCGGTCAG 741727 Query 41131 GTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGA 41190 || ||||| |||| || || || || || || || |||||| | || || |||| Sbjct 741726 CCGATATGGGTTTAGGTGTACCATTCAATATTGCAAGCTATGCTTCATTGACATACATGA 741667 Query 41191 TTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATA 41250 |||| || ||||| || ||||| || || || | || || | || |||| ||| Sbjct 741666 TTGCTCATGTTACTGGCTTGAAACCAGGCGATTTCATCCATACAATTGGCGATGCTCATG 741607 Query 41251 TTTACATTAATCACATAGAGCCGTTAA 41277 |||| | ||||| || || || |||| Sbjct 741606 TTTATCTCAATCATATTGAACCATTAA 741580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397337443222375