Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq6116 145 1e-29 seq29 95.1 2e-14 seq311 87.8 2e-12 >seq6116 Length=1078 Score = 145 bits (160), Expect = 1e-29 Identities = 463/704 (66%), Gaps = 27/704 (4%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||| ||||||| |||||| || ||||| |||| || ||||| | |||||| || ||| Sbjct 296 GTAAATGTTTGATGTGTACGGCTCAAATGATTCGTTGTTACCAAGGATTTGAGCCGTGCT 355 Query 110767 GGCTGTTGGCATTGGTGCCATCA--AAAGACTGTTACGAAGACCCTTCTCCTTGATGCGT 110824 ||| || ||||| ||||| | | || || | | || | ||| | | ||| | Sbjct 356 GGCGGTAGGCATGGGTGCAAGTAGCAATGAATTT--CGGACACCATGTTGGGCGATT--T 411 Query 110825 TCCTTGAGAA--CATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAA 110880 ||| | || || ||| | | ||| | || ||||| | |||| |||| ||| | Sbjct 412 TCCCTTTCAATTCAGTCCAATTCCATAGATCAG-TTGGTGTTTTGTTCC-ACATATCATA 469 Query 110881 CTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTC 110940 || || | |||| | | || || ||| || | ||||| || | || ||| Sbjct 470 TTGTAGAATACCTTTGCTGACTGGTGACCCCGCATATGTTTCGTATGGGCCGAATTTTTC 529 Query 110941 AGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATT 111000 ||||||||||||||| || |||| | | | ||| |||||||| || || | ||| Sbjct 530 AGCCAATTCACAGCTGGCTTCCAATGCACCATAATAAATGGTTTCGAAAATTTGTTGATT 589 Query 111001 CATCTCCTTG-GCTTCATCTGAA---TCAAATGCGTAGCGGCACAAAATAAATACATCCG 111056 ||| ||| || | | || | ||| ||| || || |||||| || |||| | Sbjct 590 CAT----TTGAGCCGCCTGTGGACTTTCATATGGATAACGCATCAAAATGAACGCATCGG 645 Query 111057 CGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTC- 111115 | | |||||||| ||| | ||||| || | ||||| |||| || ||| || || Sbjct 646 CCAAACCTTGAATACCAATTCCAATGGGACGATGTCGTTTATTCGATTTTTCTGC-CTCG 704 Query 111116 -TCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT 111174 |||| |||||| |||| || || | | ||| | |||| ||||||| | ||||| Sbjct 705 GGCAAC-GGATAATAATTGACATCGATAATTTTGTTCAAATTTCTGGTAACGACTTTTGT 763 Query 111175 GATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAG 111234 ||| || | | ||||| | ||||||| || | | || ||||| || | || Sbjct 764 GATGTCTTTCAATTTTTGAAAATCAAATGT---TTTGTTTTGTGTGACAAACATATTAAC 820 Query 111235 GGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTC 111294 || || || |||||||| |||||||| ||||| || || ||||| || | ||||| Sbjct 821 AGCAATCGAGGCCAAATTACAAACAGCAACTTCATCTTTGTCGGTGTATTCAACGATTTC 880 Query 111295 TGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCA 111354 |||||||| || || || || || | ||||| ||| || ||||| |||||| Sbjct 881 AGTACATAAATTACTACATCGGATAGTGCCAAGATTCTGTTGATTGCTCTTTCGGTTGCA 940 Query 111355 CGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTG 111398 ||||| ||||| | ||||| || || || || || | |||| Sbjct 941 TGCATCTTTGTACAAGATGTACGGTGTGCCTGTTTCAATTTGTG 984 >seq29 Length=2096867 Score = 95.1 bits (104), Expect = 2e-14 Identities = 560/883 (63%), Gaps = 19/883 (2%) Strand=Plus/Minus Query 110903 GGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCC 110962 || || || ||| | |||||||| | || | || ||||||||||| || || ||| Sbjct 937616 GGTGATCCATCATATGTTTCATATGGCCCATCAATCTCGGCCAATTCACAACTAGCTTCC 937557 Query 110963 AGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAA 111022 | || | | || || ||||| || || | ||| | | | | || ||||| Sbjct 937556 AAGGCACCATAGTAAATCGTTTCGAAAATTTGCTGATTTAGTTTCATTGCCTCATCACTT 937497 Query 111023 TCAAATGCGTAGCGGCA-CAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAAT 111081 ||| ||| | | ||| |||||| ||| |||| || | |||||||| || | |||| Sbjct 937496 TCATATG-GAATTCGCATCAAAATGAATGCATCGGCTAAACCTTGAATTCCAATGCCAAC 937438 Query 111082 AGGTCTGTGTCGCATATTAGA-CTTTC-GCGCAGTCTCAACGGGATAAAAATTTCTGTCA 111139 || | || || | || || | ||| || | ||| || |||| | || ||| Sbjct 937437 CGGCCGATGACGTTTGTTGGAACGTTCAGCTTCGGG-CAATGG-ATAATAGTTAACATCA 937380 Query 111140 ATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCA 111199 |||| | ||| |||||| ||||| | ||||||||||| | | || ||| |||| Sbjct 937379 ATGATTTTGTTCAGATTTCGTGTAACGACTTTTGTGATTTCTTTCAACTTATCAAAATCG 937320 Query 111200 AAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACA 111259 | || | ||| | | ||| || | || ||| || ||||||||||| |||||| Sbjct 937319 TATGTTT---TGTCTGCGGTTACAAACATGTTAACGGCTATCGATGCCAAATTACAAACA 937263 Query 111260 GCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATC 111319 || | ||||| | |||| | || | |||||| |||||||| || | | ||| Sbjct 937262 GCAATTTCATCAGAACTTGTGAATTCAACAATTTCGGTACATAAATTACTGCATTGAATG 937203 Query 111320 GTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGC 111379 || || | |||| ||||||||| || ||||| || || ||| | | |||||| || Sbjct 937202 GTACCAAGGTTCTGTTGGTTACTTTTACGATTGCAGGCGTCTTTGAATAACATGTATGGT 937143 Query 111380 GTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCGGCTGGTACAATG 111439 || || || || | |||| | | ||| ||||| ||| || || || Sbjct 937142 GTTCCAGTTTCGATTTGTGCCTGAACAATTTGAAACCAAAGATCCCGAGCCTTCAC-TTG 937084 Query 111440 GC-GTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCA-CCCA 111497 | | || || || || || | || ||||| ||||||||| | | |||| Sbjct 937083 TCTGATGAAATTCCCTTCTTTTTCATAATCGGTATAGAGTTTTTCAAACTCTTGACCCCA 937024 Query 111498 CCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCT 111557 || | || ||| ||| |||| |||||| | | | ||| || | | | Sbjct 937023 TTTTGTGTGTAAG-CCTTGTGATTTGTGTGGACACATTAAACTCCACATTTCATCGTTTT 936965 Query 111558 CAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAG 111617 |||| || | |||||| | || |||||||| |||| |||| ||||| | ||| || Sbjct 936964 CAACACGTTGCATGAACAAATCGGGAATCCAAAGGGCCAAAAACAGATCACGACATCGTT 936905 Query 111618 CCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATG 111677 | ||||| | ||| || ||| | | | || || | | || || ||||||| Sbjct 936904 CTTCTTCTTGACCGGTATTCTTTCGAAGGTTCAAAAATTCGAAAACTTCAGCATGCCATG 936845 Query 111678 GCTCAAGATAGACTGCGATAGATCCCTTTCGACG---CCCAGCTTGATTTACATAGCGCG 111734 |||| || || | |||| || | | |||| ||| |||||| ||||| || | Sbjct 936844 GCTCGAGGTAAATGGCGA---ATGCACCTGGACGTTTTCCACCTTGATCGACATACCGAG 936788 Query 111735 CTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGA 111777 | || || ||| | || ||||||||||| | ||||||| ||| Sbjct 936787 CGGTTGCATTATAAACACGAAGCATTGGCACTATACCATTTGA 936745 >seq311 Length=991721 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 11624 CCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCA 11683 || || |||||||| ||||| ||||| | ||| ||||| ||||| || || || || Sbjct 10908 CCGACAGCATCAATTTCATCGATGAACAAAATGCATGGAGCATTTTTACGAGCTGTTGCA 10967 Query 11684 AAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCA 11743 || | ||| ||||| | | | ||| |||||||||||||| |||| ||| | | || Sbjct 10968 AACATATCTCGAACACGTGATGGACCAACACCAACAAACATTTCCAAAAATTCCGAACCA 11027 Query 11744 GAGCACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 11802 || |||| | ||||| ||||| | || || || | ||| |||||| | ||||| Sbjct 11028 GA-AACTGACAAAAATGGAACATTCGCCTCCCCAGCCGTTGCTTTGGCGAGCAATGTCTT 11086 Query 11803 TCCCGTACCT 11812 ||||||||| Sbjct 11087 ACCCGTACCT 11096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627839861460000