Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq318 107 2e-18 >seq318 Length=2229815 Score = 107 bits (118), Expect = 2e-18 Identities = 216/315 (69%), Gaps = 9/315 (3%) Strand=Plus/Plus Query 158939 CAATAAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGG 158998 ||| ||| || || | |||||||| || ||||| ||||||||||| |||| ||| | | Sbjct 709653 CAACAAATTCTCGAACACTGTGCGTTTCACCAGTTGCAATCACAAAATCCTGTGGTTCTG 709712 Query 158999 GCTGTTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCT 159058 || || | |||||||||||| || || || ||||| | || || ||||| || || | Sbjct 709713 TTTGCTGCAACATGAGCCACATCGCTTCAACATAATCTTTGGCATGGCCCCAATCACGTT 709772 Query 159059 TGGCATCCATGTTCCCGAGCTCGATGACTTTTCCA---GACTT-TTTCCACTCAGCCAGA 159114 | | ||||| || || | || | || ||| | || || || | | | || | Sbjct 709773 TTGAATCCAAATTGCCCAATTCAA--ACGATTCAATTTGATTTAATTTGATTTTGGCA-A 709829 Query 159115 CCGA--GCGTGATCTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAA 159172 | || |||| || || ||||| ||||| | | | || || || || || || |||| Sbjct 709830 CAGATCGCGTTATTTTACGCGTAACAAAATTTTCACCACGTCGCGGTGATTCGTGATTAA 709889 Query 159173 ACAGAATGCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGT 159232 ||| ||| || | ||||| |||| ||||||| ||| || |||||| || ||||| Sbjct 709890 ACAAAATTCCATTGCAAGCAAACATATTATAGGCCTCACGATAATTTGTAACAATCCAAA 709949 Query 159233 ATCCAAAGAGCTTGG 159247 || || | || |||| Sbjct 709950 ATGCATACAGTTTGG 709964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547048586105000