Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq17930 167 3e-36 seq193 161 1e-34 seq28 145 9e-30 seq6000 100 3e-16 >seq17930 Length=2109152 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || || || || |||||||||||||| || ||||| || ||| || Sbjct 1835308 ATGCAAATTTTCGTTAAAACTCTAACCGGCAAGACTATCACACTTGAAGTCGAGCCATCC 1835367 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | ||||||||||| || ||||| || || ||||| |||||||| Sbjct 1835368 GACACAATCGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAA 1835427 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | |||||||| ||||| ||| | || |||| ||||| | | || || ||| Sbjct 1835428 CAACGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGCCGTACATTGTCCGATTACAAT 1835487 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||||||| || | ||| | || ||||||||||| ||||| Sbjct 1835488 ATCCAAAAGGAATCAACATTACATTTGGTATTGCGTCTTCGTGGTGG 1835534 >seq193 Length=1219868 Score = 161 bits (178), Expect = 1e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || | ||||| || || || ||| | ||||| || || Sbjct 521913 ATGCAAATTTTTGTGAAAACATTGACCGGAAAAACCATCACTTTGGAGGTCGAACCATCA 521854 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| | ||||| || || || ||||| || |||||||| |||||||| Sbjct 521853 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATTCCACCAGACCAA 521794 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||| | |||||||| ||||| ||| | || |||| |||||| | ||| |||||||| Sbjct 521793 CAGCGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGTCGTACTTTGAGC-GACTATAA 521735 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| ||||| ||| | ||| | || ||||||||||| ||||| Sbjct 521734 CATTCAAAAAGAATCAACTTTGCATTTGGTATTGCGTCTTCGTGGTGG 521687 Score = 149 bits (164), Expect = 7e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || ||||| || | ||||| || || || ||| | |||||||| || Sbjct 520287 ATGCAAATTTTCGTCAAAACATTGACCGGAAAAACCATCACTTTGGAGGTTGAACCATCA 520228 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||||||||| || ||||| || || ||||| ||||| || Sbjct 520227 GACACCATCGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCGCCAGATCAA 520168 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||| | |||||||| || |||||| | || |||| ||||| | ||| |||||||| Sbjct 520167 CAGCGTTTGATTTTTGCCGGCAAGCAATTGGAAGATGGCCGTACATTGAGC-GACTATAA 520109 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | ||||||||||||| || | ||| | || | |||||||| || ||| Sbjct 520108 TATCCAAAAGGAATCAACATTGCATTTGGTTCTTCGTCTTCGTGGCGGA 520060 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| |||||||| || | || ||||| || || ||| | || ||||| || Sbjct 521229 ATGCAAATTTTTGTCAAAACATTGACTGGCAAAACCATCACTTTGGAAGTTGAACCATCA 521170 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || || ||||| ||||| ||||| ||||| || Sbjct 521169 GACACCATCGAAAACGTTAAGGCCAAGATCCAAGACAAAGAGGGTATTCCACCAGATCAA 521110 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 || || | |||||||||||||| ||| | || |||| |||||| | ||| ||||| || Sbjct 521109 CAACGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTGAGC-GACTACAA 521051 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| ||||| ||| | ||| | || ||||||||||| ||||| Sbjct 521050 CATTCAAAAAGAATCAACTTTGCATTTGGTATTGCGTCTTCGTGGTGG 521003 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| |||||||| || | || |||||||| || ||| | || ||||| || Sbjct 521457 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACTTTGGAAGTTGAACCATCA 521398 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || || ||||| || || ||||| ||||| || Sbjct 521397 GACACCATCGAAAACGTTAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 521338 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||| | ||||| || ||||| ||| | || || | |||||| | ||| ||||| || Sbjct 521337 CAGCGTTTGATTTTCGCCGGTAAACAATTGGAAGACGGTCGTACATTGAGC-GACTACAA 521279 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || |||||||| || | ||| | |||||||||||||| ||||| Sbjct 521278 CATTCAGAAGGAATCAACATTGCATTTGGTCTTGCGTCTTCGTGGTGG 521231 Score = 134 bits (148), Expect = 2e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||||||||| || | || |||||||| || || | || ||||| || Sbjct 521685 ATGCAAATCTTTGTCAAAACATTGACTGGCAAGACCATCACATTGGAAGTTGAACCATCA 521626 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| | ||||| || || || ||||| || || ||||| ||||| || Sbjct 521625 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 521566 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||| | ||||| || ||||| || | || || | |||||| | ||| |||||||| Sbjct 521565 CAGCGTTTGATTTTCGCCGGTAAACAGTTAGAAGACGGTCGTACTTTGAGC-GACTATAA 521507 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| ||||| || | ||| | || | |||||||| ||||| Sbjct 521506 CATTCAAAAAGAATCAACATTGCATTTGGTTCTCCGTCTTCGTGGTGG 521459 Score = 125 bits (138), Expect = 8e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||||||||| || | || || || || || || | || ||||| || Sbjct 520792 ATGCAAATCTTTGTCAAAACATTGACTGGAAAAACCATCACATTGGAAGTTGAACCATCA 520733 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| | ||||| || || || ||||| || || ||||| ||||| || Sbjct 520732 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 520673 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | ||||| || ||||| || | || || | ||| || || | |||||||| Sbjct 520672 CAGCGTTTGATTTTCGCCGGTAAACAGTTAGAAGACGGTCGCACTTTATCCGACTATAAC 520613 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| ||||| || | ||| | || | |||||||| ||||| Sbjct 520612 ATTCAAAAAGAATCAACATTGCATTTGGTTCTCCGTCTTCGTGGTGG 520566 Score = 120 bits (132), Expect = 3e-22 Identities = 126/163 (77%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 27471 CATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCG 27530 ||||| |||| | ||||| || || || ||||| || || ||||| ||||| || || || Sbjct 520955 CATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACG 520896 Query 27531 TCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCC 27589 | |||||||||||||| ||| | || |||| |||||| | ||| |||||||| | | Sbjct 520895 ATTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTGAGC-GACTATAACATTC 520837 Query 27590 AAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||| | ||| | || ||||||||||| ||||| Sbjct 520836 AAAAAGAATCAACTTTGCATTTGGTATTGCGTCTTCGTGGTGG 520794 Score = 111 bits (122), Expect = 2e-19 Identities = 116/150 (77%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || || || ||||| ||||| ||||| ||||| || || || | ||||||||| Sbjct 520437 AAGGCCAAGATCCAAGACAAAGAGGGTATTCCACCAGATCAACAACGATTGATTTTTGCT 520378 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCAC 27602 ||||| ||| | || |||| |||||| | ||| ||||| || | ||||| ||||| || Sbjct 520377 GGTAAACAATTGGAAGATGGTCGTACTTTGAGC-GACTACAACATTCAAAAAGAATCAAC 520319 Query 27603 TCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | ||| | || ||||||||||| ||||| Sbjct 520318 TTTGCATTTGGTATTGCGTCTTCGTGGTGG 520289 >seq28 Length=2173237 Score = 145 bits (160), Expect = 9e-30 Identities = 171/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGA---GTCA 27462 ||||| || || || || || || || || |||||||| ||||| || || || |||| Sbjct 1269779 ATGCAGATTTTCGTTAAAACCCTCACGGGTAAGACTATCACTCTCGAAGTCGAACCGTCA 1269838 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 | | | || | |||| | ||||| ||||| || |||||||| |||||||| ||||| Sbjct 1269839 G---ACACTATCGAAAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCACCAGAT 1269895 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 || || ||| |||| ||||||||||| ||| | || |||| |||||| | | ||||| Sbjct 1269896 CAACAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGTCGTACATTGTCCGACTAC 1269955 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | ||||||||||| || || ||| | || | |||||||| ||||| Sbjct 1269956 AACATTCAAAAGGAATCAACACTCCATTTGGTTCTCCGTCTTCGTGGTGG 1270005 >seq6000 Length=1279 Score = 100 bits (110), Expect = 3e-16 Identities = 111/145 (77%), Gaps = 5/145 (3%) Strand=Plus/Minus Query 27505 GAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGAT 27564 || || || || ||||| || |||||| | |||||||| || |||||| | || |||| Sbjct 1279 GAAGGTATACCACCAGATCAACAGCGTTTGATTTTTGCCGGCAAGCAATTGGAAGATGGC 1220 Query 27565 CGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 ||||| | ||| ||||||||| ||||||||||||| || | || | ||||||||||| Sbjct 1219 CGTACATTGAGC-GACTATAATATCCAAAAGGAATCAACATTGCACTTGGTCTTGCGTCT 1161 Query 27624 TCGCGGTGGACAAGTTTAAAGTTTT 27648 ||| || ||| || |||| |||| Sbjct 1160 TCGTGGCGGAAAA---TAAAATTTT 1139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570135920662000