Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq17930 190 2e-43 seq28 179 3e-40 seq193 172 5e-38 seq314 149 5e-31 seq6000 87.8 2e-12 >seq17930 Length=2109152 Score = 190 bits (210), Expect = 2e-43 Identities = 180/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || |||||||| ||||||||| |||| || |||||||| || || ||| Sbjct 1835308 ATGCAAATTTTCGTTAAAACTCTAACCGGCAAGACTATCACACTTGAAGTCGAGCCATCC 1835367 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| ||||| ||||||||||||||||| ||||| || ||| Sbjct 1835368 GACACAATCGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAA 1835427 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||||| |||||||||||||| | || | ||||||||||| Sbjct 1835428 CAACGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGCCGTACATTGTCCGATTACAAT 1835487 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || || ||||||||||| |||||| | || ||||| || Sbjct 1835488 ATCCAAAAGGAATCAACATTACATTTGGTATTGCGTCTTCGTGGTGGTAT 1835537 >seq28 Length=2173237 Score = 179 bits (198), Expect = 3e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| || || ||||| || || || ||| |||| ||||| ||||| ||||||| Sbjct 1269777 CCATGCAGATTTTCGTTAAAACCCTCACGGGTAAGACTATCACTCTCGAAGTCGAACCGT 1269836 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||| | || || | ||||| ||||| |||||||| ||||| || ||||| |||| Sbjct 1269837 CAGACACTATCGAAAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCACCAGATC 1269896 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 |||| |||||||| | || || |||||||||||||| || || | ||||| |||| Sbjct 1269897 AACAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGTCGTACATTGTCCGACTACA 1269956 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||||||||||| || || | ||||||||| | ||| | || ||||| Sbjct 1269957 ACATTCAAAAGGAATCAACACTCCATTTGGTTCTCCGTCTTCGTGGTGG 1270005 >seq193 Length=1219868 Score = 172 bits (190), Expect = 5e-38 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| |||| |||||| | || ||| | ||||| ||||| || Sbjct 521457 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACTTTGGAAGTTGAACCATCA 521398 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || |||||||||||||| || ||||| |||||| Sbjct 521397 GACACCATCGAAAACGTTAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 521338 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | |||||| ||||||||||||||| || || | ||| |||||| Sbjct 521337 CAGCGTTTGATTTTCGCCGGTAAACAATTGGAAGACGGTCGTACATTGAGCGACTACAAC 521278 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||| || || || |||||||| |||||| | || ||||| || Sbjct 521277 ATTCAGAAGGAATCAACATTGCATTTGGTCTTGCGTCTTCGTGGTGGTAT 521228 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| |||| || || | || || | ||||| ||||| || Sbjct 520792 ATGCAAATCTTTGTCAAAACATTGACTGGAAAAACCATCACATTGGAAGTTGAACCATCA 520733 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || |||||||||||||| || ||||| |||||| Sbjct 520732 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 520673 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | |||||| ||||| || |||||| || || | ||||| || ||| Sbjct 520672 CAGCGTTTGATTTTCGCCGGTAAACAGTTAGAAGACGGTCGCACTTTATCCGACTATAAC 520613 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || || || ||||||||| | ||| | || ||||| || Sbjct 520612 ATTCAAAAAGAATCAACATTGCATTTGGTTCTCCGTCTTCGTGGTGGTAT 520563 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| |||| |||||| | || || | ||||| ||||| || Sbjct 521685 ATGCAAATCTTTGTCAAAACATTGACTGGCAAGACCATCACATTGGAAGTTGAACCATCA 521626 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || |||||||||||||| || ||||| |||||| Sbjct 521625 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 521566 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | |||||| ||||| || |||||| || || | ||| || ||| Sbjct 521565 CAGCGTTTGATTTTCGCCGGTAAACAGTTAGAAGACGGTCGTACTTTGAGCGACTATAAC 521506 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || || || ||||||||| | ||| | || ||||| || Sbjct 521505 ATTCAAAAAGAATCAACATTGCATTTGGTTCTCCGTCTTCGTGGTGGTAT 521456 Score = 158 bits (174), Expect = 1e-33 Identities = 174/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 ||||||| || ||||| ||||| ||||||| || | || ||| | || || ||||| | Sbjct 521915 CCATGCAAATTTTTGTGAAAACATTGACCGGAAAAACCATCACTTTGGAGGTCGAACCAT 521856 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||| | ||||| | ||||| || || |||||||||||||| || ||||| || | Sbjct 521855 CAGACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATTCCACCAGACC 521796 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 |||||||||| || | ||||| |||||||||||||| || || | ||| || | Sbjct 521795 AACAGCGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGTCGTACTTTGAGCGACTATA 521736 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||| || || || || |||||||| |||||| | || ||||| || Sbjct 521735 ACATTCAAAAAGAATCAACTTTGCATTTGGTATTGCGTCTTCGTGGTGGTAT 521684 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| |||| ||||| | || ||| | ||||| ||||| || Sbjct 521229 ATGCAAATTTTTGTCAAAACATTGACTGGCAAAACCATCACTTTGGAAGTTGAACCATCA 521170 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || ||||||||||| || || ||||| |||||| Sbjct 521169 GACACCATCGAAAACGTTAAGGCCAAGATCCAAGACAAAGAGGGTATTCCACCAGATCAA 521110 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | || || |||||||||||||| || || | ||| |||||| Sbjct 521109 CAACGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTGAGCGACTACAAC 521050 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || || || |||||||| |||||| | || ||||| || Sbjct 521049 ATTCAAAAAGAATCAACTTTGCATTTGGTATTGCGTCTTCGTGGTGGTAT 521000 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| ||||||| || | || ||| | || || ||||| || Sbjct 520287 ATGCAAATTTTCGTCAAAACATTGACCGGAAAAACCATCACTTTGGAGGTTGAACCATCA 520228 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| ||||| |||||||||||||| || || || |||||| Sbjct 520227 GACACCATCGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCGCCAGATCAA 520168 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | |||||||| ||||||||||| | || | ||| || || Sbjct 520167 CAGCGTTTGATTTTTGCCGGCAAGCAATTGGAAGATGGCCGTACATTGAGCGACTATAAT 520108 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || |||||||| || || || ||||||||| | ||| | || || || Sbjct 520107 ATCCAAAAGGAATCAACATTGCATTTGGTTCTTCGTCTTCGTGGCGG 520061 Score = 116 bits (128), Expect = 3e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 27039 GAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCA 27098 ||||| || ||| | ||||| | ||||| || || |||||||||||||| || ||| Sbjct 520969 GAACCATCAGACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATTCCA 520910 Query 27099 CCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCC 27158 || |||||||| || || || | || || |||||||||||||| || || | | Sbjct 520909 CCAGATCAACAACGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTGAGC 520850 Query 27159 GATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| || || || || |||||||| |||||| | || ||||| || Sbjct 520849 GACTATAACATTCAAAAAGAATCAACTTTGCATTTGGTATTGCGTCTTCGTGGTGGTAT 520791 Score = 105 bits (116), Expect = 6e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || ||||||||||| || || ||||| |||||||| || || || | || || ||| Sbjct 520431 AAGATCCAAGACAAAGAGGGTATTCCACCAGATCAACAACGATTGATTTTTGCTGGTAAA 520372 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 ||||||||||| || || | ||| |||||||||||||| || || || || ||| Sbjct 520371 CAATTGGAAGATGGTCGTACTTTGAGCGACTACAACATTCAAAAAGAATCAACTTTGCAT 520312 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||| | || ||||| || Sbjct 520311 TTGGTATTGCGTCTTCGTGGTGGTAT 520286 Score = 86.0 bits (94), Expect = 5e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| |||| |||||| | || ||| | ||||| ||||| || Sbjct 520564 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACTTTGGAAGTTGAACCATCA 520505 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || ||||||||||| || || ||||| |||||| Sbjct 520504 GACACCATCGAAAACGTTAAGGCCAAGATCCAAGACAAAGAGGGTATTCCACCAGATCAA 520445 Query 27108 CAGCGTT 27114 || |||| Sbjct 520444 CAACGTT 520438 >seq314 Length=2668924 Score = 149 bits (164), Expect = 5e-31 Identities = 247/350 (71%), Gaps = 5/350 (1%) Strand=Plus/Minus Query 135311 CGCCGCGAATTGGCGGACAATTTTTGTTATTATAACAAACATTATGATTGCATAGAAGGT 135370 || || ||||| |||| |||||||||| |||||| || ||||||||| || ||||| Sbjct 825682 CGACGTGAATTATCGGATAATTTTTGTTTTTATAATGAAAATTATGATTCATTAAAAGGT 825623 Query 135371 GCTCCGGCATGGGCGCAACAAACTTTGCACGCTCACGCCTCTGATCGCAGAGACTTTTGT 135430 | | | ||||| || |||| || | || || | ||| ||| || | | Sbjct 825622 TGTTCATCCTGGGCACAGGAAACATTAAAAGCGCATAGCAAAGATAAAAGA-ACATGGAT 825564 Query 135431 -TACACGCGCGAGCAATGGGACCAAGCGTTGACGCATGACCCGTTGTGGAACGCGGCACA 135489 || ||| || |||| || ||| || ||||| ||||||| ||||||| Sbjct 825563 CTATACGGTGGATCAATTGGCTGGAGCCAAAACCCATGATGATCTGTGGAATTCGGCACA 825504 Query 135490 ACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCATGTATTGGGCAAAAAA 135549 || || || |||||| ||||||||||| ||| | |||||||||||||||||||| Sbjct 825503 GATTCAACTGAATAAAGAAGGAAAAATGCACGGTTTTCTTCGCATGTATTGGGCAAAAAA 825444 Query 135550 GATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACA-CGCAATATTTTTTAATG 135608 ||||||||||||| | | ||| || | | |||| || || | ||| |||| ||| |||| Sbjct 825443 GATATTGGAATGGACCGAATCACCGGAAAAGGCTCT-CAGTATCGCCATATATTTGAATG 825385 Query 135609 ATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGT-TGTAT 135657 |||| || | ||||||| |||||| ||||||| || || ||| ||||| Sbjct 825384 ATTATTATGCTATAGATGGTCGCGATCCAAATGGATATGTTGGTATGTAT 825335 Score = 86.0 bits (94), Expect = 5e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 135648 TAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGT 135707 |||| ||||||||||| ||| ||||| | || ||||| || ||| ||| || | | | Sbjct 825262 TAGGCTGTATGTGGTCAATTGGCGGTATTCATGATCAGGGCTGGTCGGAACGGACGATTT 825203 Query 135708 TTGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGTAAA 135762 |||| || ||||| || |||||||||| ||| |||| ||| ||||| || |||| Sbjct 825202 TTGGTAAAATTCGATACATGAACTATGCCGGCTGTAAAAGGAAATTCGATATAAA 825148 >seq6000 Length=1279 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 27087 GAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGT 27146 ||||| |||||||| |||||||||||||| || | |||||||| ||||||||||| | Sbjct 1279 GAAGGTATACCACCAGATCAACAGCGTTTGATTTTTGCCGGCAAGCAATTGGAAGATGGC 1220 Query 27147 TCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTG 27206 || | ||| || || || |||||||| || || || || ||||| |||||| | Sbjct 1219 CGTACATTGAGCGACTATAATATCCAAAAGGAATCAACATTGCACTTGGTCTTGCGTCTT 1160 Query 27207 CGGGGTGG 27214 || || || Sbjct 1159 CGTGGCGG 1152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434785342152000