Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_028667.1 Length=39593 Score E Sequences producing significant alignments: (Bits) Value seq12839 107 5e-19 seq6724 95.1 3e-15 >seq12839 Length=546 Score = 107 bits (118), Expect = 5e-19 Identities = 185/269 (69%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 15008 CCATGCAAACTGATATGGCCAAGATTCGCCGGGAATCCCTGCGCTGGCTGATTCTGCTGA 15067 ||||| | | |||| |||||| ||||||||||||||||||||| || | |||| Sbjct 272 CCATGAACATTGATCCAGCCAAGGCGCGCCGGGAATCCCTGCGCTGGTACATCATCCTGA 331 Query 15068 CCCTGAACAACGCTCGACCGGTGGGTGCCTACGAAGGTCCGGTCCTTTCCGTGGCGCAGA 15127 |||| || | | || || || | | | |||||| ||| || || ||| Sbjct 332 CCCTTAATACATCGCGCCCAGTCGATCCGCACGAAGCGGTGGTGCTGTCGACCATCCAGG 391 Query 15128 GCGAGTATCCCGACGCGACACCACTGGAGATCCGCCGCGAGCTGGACTACTTGGCCGACC 15187 || | ||||||||| || |||||| | || ||||| ||||||||| ||||||||| Sbjct 392 GCATCTTTCCCGACGCCACCGGCCTGGAGCTGCGGCGCGAACTGGACTACCTGGCCGACC 451 Query 15188 GTGACCTGGTGACCCTGGTCAAGGAACCGTCCGGCAAGTGGTTCGCCGATTTGACCCGGT 15247 || ||||| || ||| |||| | || |||| ||| | || | |||| | | Sbjct 452 GTAGCCTGGCCACTCTGAACAAGCAGCCCAGCGGCGTATGGATTTGCGGTCTGACGCACT 511 Query 15248 ACGGCACCGACGTCGCCGAGTACACCATC 15276 ||||| ||||||||| || ||||||||| Sbjct 512 ACGGCGTCGACGTCGCGGAATACACCATC 540 >seq6724 Length=978 Score = 95.1 bits (104), Expect = 3e-15 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 13668 GGCGCCGACCAGCTGGCCTGGTTCGATTCCGTCGAGCGCTTCAACGCCGGGCGCTCGGCC 13727 || ||||| | |||| |||||||| ||||||| ||||| | |||||| || ||||||||| Sbjct 21 GGGGCCGATCCGCTGACCTGGTTCAATTCCGTTGAGCGATACAACGCGGGCCGCTCGGCC 80 Query 13728 GCCAACTTCCGCGAGAACCGCAACTACCCGCGCCTCATCCTGCTGCG 13774 || |||| || |||||| | ||||||||||| ||||| |||| Sbjct 81 GCAGCCTTCAAGGAAAACCGCCAATACCCGCGCCTGATCCTTTTGCG 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126539211872250