Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq22268 190 7e-44 seq22045 105 2e-18 >seq22268 Length=656 Score = 190 bits (210), Expect = 7e-44 Identities = 242/327 (74%), Gaps = 7/327 (2%) Strand=Plus/Minus Query 40091 CCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCGGATG 40150 |||||||| |||||| ||| || | ||||||||||||| ||||| |||| Sbjct 345 CCGAAGGTGATGATCTGGCTCACCGCGTTGCGGCCGTACTTCTCGGCCACGTAATCGATG 286 Query 40151 ACCTCGCCGCGACGCCGGTCATC--GAAGTCGATGTCAACGTCGGGCATGGACACGCGCT 40208 ||| | |||| |||| ||| |||||||| ||| | |||||||||||| || || | Sbjct 285 ACCCGGTCGCG--GCCGTCCATGCAGAAGTCGACGTCGAAGTCGGGCATGGA-ACCCGTT 229 Query 40209 CGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCC 40268 | ||||| |||||| | ||||| | || | | ||||| || ||||||||||||||| Sbjct 228 CCGGGTTGAGGAAC-GTTCGAACAGCAGGTCATATTCCAGCGG-TCGAGGTCGGTGATCT 171 Query 40269 CGAGGCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACACGC 40328 | |||||| |||||||| ||||| |||| || || || ||||| ||| ||||| Sbjct 170 TCTGTACGTAGGCCACCAGCGAGCCGGCACCCGACCCACGACCGGGACCTACCGGCACGC 111 Query 40329 CGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCA 40388 |||| | ||||||||| ||||||||| |||| ||||||||| |||||||||| Sbjct 110 CGTTGTTCTTGGCCCACTTGATGAAGTCCATCACGATCAGGAAGTAACCGGGGAAGCCCA 51 Query 40389 TCTGGATGATCATGTCGATCTCGTACT 40415 |||||||||| || || | |||| ||| Sbjct 50 TCTGGATGATGATATCCAGCTCGAACT 24 >seq22045 Length=722 Score = 105 bits (116), Expect = 2e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 39208 CTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCCCGACGCAGCAGGTCGGCCTG 39267 || |||||||| |||||||||||||||||||||| ||||||||||||| |||||| Sbjct 381 CTGCTTGGCCATTTCCTCGGGCTTCTTCTTGCCCATTGCCCGACGCAGCATGTCGGCGCC 322 Query 39268 GCCCAGGCTGTAGCCAGCGAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGAT 39327 |||| | |||| || || | | ||| || || | |||||||||||| || | ||| Sbjct 321 ACCCAAGGTGTACCCCGCCATCACCTGGGCGATCTGCATCACCTGCTCCTGATAAAGGAT 262 Query 39328 GAGCCCGTACGTCGGGTCCAG 39348 || ||||| ||||| |||| Sbjct 261 GATGCCGTAGGTCGGCGCCAG 241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160359779383650