Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq17930 132 3e-26 seq193 111 1e-19 seq28 93.3 3e-14 >seq17930 Length=2109152 Score = 132 bits (146), Expect = 3e-26 Identities = 177/246 (72%), Gaps = 10/246 (4%) Strand=Plus/Plus Query 27776 AACACAATAGTAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTG 27835 || ||| || || ||||||||||| || |||||||| || || || ||| ||| ||| Sbjct 1835294 AAAACACCAGAAAGATGCAAATTTTCGTTAAAACTCTAACCGGCAAGACTATCACACTTG 1835353 Query 27836 ATGTCGAAAGCACCGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGA 27890 | ||||| ||||| ||||||| ||||| ||||| |||||||| Sbjct 1835354 AAGTCGAGCCATCCGAC-----ACAATCGAAAATGTCAAGGCTAAAATCCAAGACAAAGA 1835408 Query 27891 AGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACG 27950 ||| |||| || || ||||| || ||||||||||| ||||||||||| || | || Sbjct 1835409 AGGCATTCCACCAGACCAACAACGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGCCG 1835468 Query 27951 CAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCG 28010 | |||||||||||||| |||||||| || || || |||||||| |||||| | || Sbjct 1835469 TACATTGTCCGATTACAATATCCAAAAGGAATCAACATTACATTTGGTATTGCGTCTTCG 1835528 Query 28011 TGGCGG 28016 ||| || Sbjct 1835529 TGGTGG 1835534 >seq193 Length=1219868 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847 |||||||||||||||||||| | || || ||| || || | || |||||| | || Sbjct 521913 ATGCAAATTTTTGTGAAAACATTGACCGGAAAAACCATCACTTTGGAGGTCGAACCATCA 521854 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || || | ||| ||||| || || ||||||||||| |||| || | Sbjct 521853 GACACCATTGAAAAT--GTCAAGGCCAAGATCCAAGACAAAGAAGGAATTCCACCAGACC 521796 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || || || ||||||||||| ||||||||||| || | || | ||| ||| || | Sbjct 521795 AACAGCGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGTCGTACTTTGAGCGACTATA 521736 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| |||||||| |||||||||||||| |||||| | ||||| || Sbjct 521735 ACATTCAAAAAGAATCAACTTTGCATTTGGTATTGCGTCTTCGTGGTGG 521687 Score = 102 bits (112), Expect = 6e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||| ||| |||| || || ||||| || |||||||| || ||||||||||| Sbjct 520422 GACAAAGAGGGTATTCCACCAGATCAACAACGATTGATTTTTGCTGGTAAACAATTGGAA 520363 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | ||| ||| |||||||| |||||||| |||||||||||||| ||| Sbjct 520362 GATGGTCGTACTTTGAGCGACTACAACATTCAAAAAGAATCAACTTTGCATTTGGTATTG 520303 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 520302 CGTCTTCGTGGTGG 520289 Score = 102 bits (112), Expect = 6e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847 |||||||| ||||| ||||| | ||||| ||| || ||| | || || ||| | || Sbjct 520792 ATGCAAATCTTTGTCAAAACATTGACTGGAAAAACCATCACATTGGAAGTTGAACCATCA 520733 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || || | ||| ||||| || || |||||||||||| |||| || | Sbjct 520732 GACACCATTGAAAAT--GTCAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATC 520675 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || || || ||||| ||||| ||||| || || |||| |||| || ||||| || | Sbjct 520674 AACAGCGTTTGATTTTCGCCGGTAAACAGTTAGAAGACGGTCGCACTTTATCCGACTATA 520615 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| |||||||| || |||||||||||| | ||| | ||||| || Sbjct 520614 ACATTCAAAAAGAATCAACATTGCATTTGGTTCTCCGTCTTCGTGGTGG 520566 Score = 102 bits (112), Expect = 6e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||||||| |||| || || ||||| || |||||||| || ||||||||||| Sbjct 520927 GACAAAGAAGGTATTCCACCAGATCAACAACGATTGATTTTTGCTGGTAAACAATTGGAA 520868 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | ||| ||| || ||||| |||||||| |||||||||||||| ||| Sbjct 520867 GATGGTCGTACTTTGAGCGACTATAACATTCAAAAAGAATCAACTTTGCATTTGGTATTG 520808 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 520807 CGTCTTCGTGGTGG 520794 Score = 102 bits (112), Expect = 6e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||| ||| |||| || || ||||| || |||||||| || ||||||||||| Sbjct 521136 GACAAAGAGGGTATTCCACCAGATCAACAACGATTGATTTTTGCTGGTAAACAATTGGAA 521077 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | ||| ||| |||||||| |||||||| |||||||||||||| ||| Sbjct 521076 GATGGTCGTACTTTGAGCGACTACAACATTCAAAAAGAATCAACTTTGCATTTGGTATTG 521017 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 521016 CGTCTTCGTGGTGG 521003 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||||||| ||||| || || || || || ||||||||||| || |||||||| Sbjct 520194 GACAAAGAAGGTATTCCGCCAGATCAACAGCGTTTGATTTTTGCCGGCAAGCAATTGGAA 520135 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | ||| ||| || || |||||||| || || |||||||||||| | Sbjct 520134 GATGGCCGTACATTGAGCGACTATAATATCCAAAAGGAATCAACATTGCATTTGGTTCTT 520075 Query 28003 CGTTTGCGTGGCGG 28016 ||| | |||||||| Sbjct 520074 CGTCTTCGTGGCGG 520061 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||||||| |||| || || || || || ||||| ||||| ||||||||||| Sbjct 521364 GACAAAGAAGGTATTCCACCAGATCAACAGCGTTTGATTTTCGCCGGTAAACAATTGGAA 521305 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| || | ||| ||| |||||||| || || || || ||||||||||| ||| Sbjct 521304 GACGGTCGTACATTGAGCGACTACAACATTCAGAAGGAATCAACATTGCATTTGGTCTTG 521245 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 521244 CGTCTTCGTGGTGG 521231 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847 |||||||| ||||| ||||| | ||||| || || ||| | || || ||| | || Sbjct 521685 ATGCAAATCTTTGTCAAAACATTGACTGGCAAGACCATCACATTGGAAGTTGAACCATCA 521626 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || || | ||| ||||| || || |||||||||||| |||| || | Sbjct 521625 GACACCATTGAAAAT--GTCAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATC 521568 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || || || ||||| ||||| ||||| || || |||| || | ||| ||| || | Sbjct 521567 AACAGCGTTTGATTTTCGCCGGTAAACAGTTAGAAGACGGTCGTACTTTGAGCGACTATA 521508 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| |||||||| || |||||||||||| | ||| | ||||| || Sbjct 521507 ACATTCAAAAAGAATCAACATTGCATTTGGTTCTCCGTCTTCGTGGTGG 521459 >seq28 Length=2173237 Score = 93.3 bits (102), Expect = 3e-14 Identities = 164/238 (69%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 27781 AATAGTAAA--ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATG 27838 ||||| ||| ||||| ||||| || ||||| || || || || ||| || | || | Sbjct 1269768 AATAGAAAACCATGCAGATTTTCGTTAAAACCCTCACGGGTAAGACTATCACTCTCGAAG 1269827 Query 27839 TCGAAAGCACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTC 27898 ||||| | ||| | | || ||||| ||||| ||||| ||||| ||| Sbjct 1269828 TCGAACCGTCAGACACTATCGAAAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTC 1269887 Query 27899 CGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGT 27958 | || || ||||| ||||| ||||| || ||||||||||| || | || | |||| Sbjct 1269888 CACCAGATCAACAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGTCGTACATTGT 1269947 Query 27959 CCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| |||||||| ||||| || || | ||||||||| | ||| | ||||| || Sbjct 1269948 CCGACTACAACATTCAAAAGGAATCAACACTCCATTTGGTTCTCCGTCTTCGTGGTGG 1270005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355756250138325