Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq28 134 3e-26 seq193 116 9e-21 seq17930 107 4e-18 >seq28 Length=2173237 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | || || || || || ||||| ||||| || || | | || Sbjct 1270000 ACGAAGACGGAGAACCAAATGGAGTGTTGATTCCTTTTGAATGTTGTAGTCGGACAATGT 1269941 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| || || || || ||||| | |||||||| || || |||| ||| Sbjct 1269940 ACGACCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCC 1269881 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| ||||| || || || |||||||| ||||| || ||| || ||||| Sbjct 1269880 TTCCTTGTCTTGGATTTTGGCCTTGACATTTTCGATAGTGTCTGACGGTTCGACTTCGAG 1269821 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| ||||| |||||||| || || || || | |||||| Sbjct 1269820 AGTGATAGTCTTACCCGTGAGGGTTTTAACGAAAATCTGCAT 1269779 >seq193 Length=1219868 Score = 116 bits (128), Expect = 9e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 || || || |||||||| ||||| || | ||| | | | |||||||||| |||||||| Sbjct 520091 GTTGATTCCTTTTGGATATTATAGTCGCTCAATG-TACGGCCATCTTCCAATTGCTTGCC 520149 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 || || || | || ||||| || || |||| ||||| ||||| ||||| || || Sbjct 520150 GGCAAAAATCAAACGCTGTTGATCTGGCGGAATACCTTCTTTGTCTTGGATTTTAGCCTT 520209 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 ||||||||||||||||| || ||||||||| | |||||| || ||||| || | || Sbjct 520210 GACGTTTTCGATGGTGTCTGATGGTTCAACCTCCAAAGTGATGGTTTTTCCGGTCAATGT 520269 Query 211097 CTTTACAAACACCTGCAT 211114 || || || | ||||| Sbjct 520270 TTTGACGAAAATTTGCAT 520287 Score = 109 bits (120), Expect = 1e-18 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 210917 AGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTGCTTGC 210975 ||| || |||||||| ||||| || || | ||| | | | |||||||||| || || | Sbjct 521032 AGTTGATTCTTTTTGAATGTTGTAGTCGCTCAAAG-TACGACCATCTTCCAATTGTTTAC 521090 Query 210976 CTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTT 211035 | || || || | |||||||| || || |||| || || ||||| |||||||| | Sbjct 521091 CAGCAAAAATCAATCGTTGTTGATCTGGTGGAATACCCTCTTTGTCTTGGATCTTGGCCT 521150 Query 211036 TCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAG 211095 | ||||||||||||||||| || |||||| || | |||||| || || || || | | Sbjct 521151 TAACGTTTTCGATGGTGTCTGATGGTTCAACTTCCAAAGTGATGGTTTTGCCAGTCAATG 521210 Query 211096 TCTTTACAAACACCTGCAT 211114 | || ||||| | ||||| Sbjct 521211 TTTTGACAAAAATTTGCAT 521229 Score = 102 bits (112), Expect = 2e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 || || || || || ||||| || || | ||| | | | || ||||||| || || || Sbjct 521261 GTTGATTCCTTCTGAATGTTGTAGTCGCTCAATG-TACGACCGTCTTCCAATTGTTTACC 521319 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 ||||| || | || ||||| || || |||| ||||| ||||| |||||||| || Sbjct 521320 GGCGAAAATCAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATCTTGGCCTT 521379 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 ||||||||||||||||| || |||||| || | |||||| ||||| || || | || Sbjct 521380 AACGTTTTCGATGGTGTCTGATGGTTCAACTTCCAAAGTGATGGTCTTGCCAGTCAATGT 521439 Query 211097 CTTTACAAACACCTGCAT 211114 || ||||| | ||||| Sbjct 521440 TTTGACAAAAATTTGCAT 521457 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 210990 CGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATG 211049 |||||||| || || |||| || || ||||| |||||||| || |||||||||||| Sbjct 520440 CGTTGTTGATCTGGTGGAATACCCTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCGATG 520499 Query 211050 GTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACC 211109 ||||| || |||||| || | |||||| ||||| || || | || || ||||| | Sbjct 520500 GTGTCTGATGGTTCAACTTCCAAAGTGATGGTCTTGCCAGTCAATGTTTTGACAAAAATT 520559 Query 211110 TGCAT 211114 ||||| Sbjct 520560 TGCAT 520564 >seq17930 Length=2109152 Score = 107 bits (118), Expect = 4e-18 Identities = 148/206 (72%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || || |||||||| || ||||| | | || | |||||||||| || || || Sbjct 1835504 GTTGATTCCTTTTGGATATTGTAATCGGACAATGTACGGCCATCTTCCAATTGTTTACCG 1835445 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || || || | ||||||||||| || |||| ||||| ||||| ||||| || || Sbjct 1835444 GCAAAAATCAAACGTTGTTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATTTTAGCCTTG 1835385 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || |||||||| ||||| || || || || || ||||| ||||| || || ||||| Sbjct 1835384 ACATTTTCGATTGTGTCGGATGGCTCGACTTCAAGTGTGATAGTCTTGCCGGTTAGAGTT 1835325 Query 211098 TTTACAAACACCTGCAT-TTTATGGT 211122 || || || | ||||| ||| |||| Sbjct 1835324 TTAACGAAAATTTGCATCTTTCTGGT 1835299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158788506233375