Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq28 158 8e-34 seq193 145 5e-30 seq17930 136 3e-27 seq6000 96.9 2e-15 >seq28 Length=2173237 Score = 158 bits (174), Expect = 8e-34 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||||||||||||||||||||| || || |||||||||||||| || | | Sbjct 1269779 ATGCAGATTTTCGTTAAAACCCTCACGGGTAAGACTATCACTCTCGAAGTCGAACCGTCA 1269838 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | |||| | || ||||| ||||| ||||| | || ||||||||| Sbjct 1269839 GACACTATCGAAAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCACCAGATCAA 1269898 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || |||||||| ||||| || |||||| ||||||| | || || || ||| |||||| Sbjct 1269899 CAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGTCGTACATTGTCCGACTACAAC 1269958 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || ||||| || || ||| | ||||| ||| Sbjct 1269959 ATTCAAAAGGAATCAACACTCCATTTGGTT 1269988 >seq193 Length=1219868 Score = 145 bits (160), Expect = 5e-30 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| ||||| | || |||||||| |||||| | || ||||| | | Sbjct 520287 ATGCAAATTTTCGTCAAAACATTGACCGGAAAAACCATCACTTTGGAGGTTGAACCATCA 520228 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || ||||| |||||||||||| | |||||||||||| Sbjct 520227 GACACCATCGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCGCCAGATCAA 520168 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || ||||||||||| ||| ||||||| | || || || |||| || || Sbjct 520167 CAGCGTTTGATTTTTGCCGGCAAGCAATTGGAAGATGGCCGTACATTGAGCGACTATAAT 520108 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || ||||| || || ||||| ||||| ||| Sbjct 520107 ATCCAAAAGGAATCAACATTGCATTTGGTT 520078 Score = 140 bits (154), Expect = 2e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||| | || |||||||| ||||| | |||||||| | | Sbjct 520792 ATGCAAATCTTTGTCAAAACATTGACTGGAAAAACCATCACATTGGAAGTTGAACCATCA 520733 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || || || |||||||||||| | || ||||||||| Sbjct 520732 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 520673 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || || ||||| ||||| | ||||||| ||||||||| ||| || ||| Sbjct 520672 CAGCGTTTGATTTTCGCCGGTAAACAGTTAGAAGACGGTCGCACTTTATCCGACTATAAC 520613 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || |||||||| || ||||| ||||| ||| Sbjct 520612 ATTCAAAAAGAATCAACATTGCATTTGGTT 520583 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || ||||| | || || || || |||||| | |||||||| | | Sbjct 521457 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACTTTGGAAGTTGAACCATCA 521398 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || || || |||||||||||| | || ||||||||| Sbjct 521397 GACACCATCGAAAACGTTAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 521338 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || || ||||| |||||| ||||||||| || || || |||| |||||| Sbjct 521337 CAGCGTTTGATTTTCGCCGGTAAACAATTGGAAGACGGTCGTACATTGAGCGACTACAAC 521278 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || || || || || ||||| ||||| || || Sbjct 521277 ATTCAGAAGGAATCAACATTGCATTTGGTCTT 521246 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || ||||| | || |||||||| |||||| | || || || | | Sbjct 521913 ATGCAAATTTTTGTGAAAACATTGACCGGAAAAACCATCACTTTGGAGGTCGAACCATCA 521854 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || || || ||||||||||| | || ||||| ||| Sbjct 521853 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATTCCACCAGACCAA 521794 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || |||||||| |||||| ||||||| | || ||||| |||| || ||| Sbjct 521793 CAGCGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGTCGTACTTTGAGCGACTATAAC 521734 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || |||||||| || || || ||||| || || Sbjct 521733 ATTCAAAAAGAATCAACTTTGCATTTGGTATT 521702 Score = 127 bits (140), Expect = 1e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||| | || || || || ||||| | |||||||| | | Sbjct 521685 ATGCAAATCTTTGTCAAAACATTGACTGGCAAGACCATCACATTGGAAGTTGAACCATCA 521626 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || || || |||||||||||| | || ||||||||| Sbjct 521625 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 521566 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || || ||||| ||||| | ||||||| || ||||| |||| || ||| Sbjct 521565 CAGCGTTTGATTTTCGCCGGTAAACAGTTAGAAGACGGTCGTACTTTGAGCGACTATAAC 521506 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || |||||||| || ||||| ||||| ||| Sbjct 521505 ATTCAAAAAGAATCAACATTGCATTTGGTT 521476 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || ||||| | || || ||||| |||||| | |||||||| | | Sbjct 521229 ATGCAAATTTTTGTCAAAACATTGACTGGCAAAACCATCACTTTGGAAGTTGAACCATCA 521170 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || || || |||||||| ||| | || ||||||||| Sbjct 521169 GACACCATCGAAAACGTTAAGGCCAAGATCCAAGACAAAGAGGGTATTCCACCAGATCAA 521110 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || || || ||||| || |||||| ||||||| | || ||||| |||| |||||| Sbjct 521109 CAACGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTGAGCGACTACAAC 521050 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || |||||||| || || || ||||| || || Sbjct 521049 ATTCAAAAAGAATCAACTTTGCATTTGGTATT 521018 Score = 102 bits (112), Expect = 6e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 |||||||| ||| | || ||||||||||| || || || ||||| || |||||| ||||| Sbjct 520422 GACAAAGAGGGTATTCCACCAGATCAACAACGATTGATTTTTGCTGGTAAACAATTGGAA 520363 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || | || ||||| |||| |||||||| |||||||| || || || ||||| || || Sbjct 520362 GATGGTCGTACTTTGAGCGACTACAACATTCAAAAAGAATCAACTTTGCATTTGGTATT 520304 Score = 102 bits (112), Expect = 6e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 |||||||||||| | || ||||||||||| || || || ||||| || |||||| ||||| Sbjct 520927 GACAAAGAAGGTATTCCACCAGATCAACAACGATTGATTTTTGCTGGTAAACAATTGGAA 520868 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || | || ||||| |||| || ||||| |||||||| || || || ||||| || || Sbjct 520867 GATGGTCGTACTTTGAGCGACTATAACATTCAAAAAGAATCAACTTTGCATTTGGTATT 520809 >seq17930 Length=2109152 Score = 136 bits (150), Expect = 3e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| |||||||||||||| || || || || || ||||| || ||||| || | Sbjct 1835305 AAGATGCAAATTTTCGTTAAAACTCTAACCGGCAAGACTATCACACTTGAAGTCGAGCCA 1835364 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | |||| | || ||||| ||||||||||| | || ||||| Sbjct 1835365 TCCGACACAATCGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGCATTCCACCAGAC 1835424 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||| ||||| || |||||||| |||||| ||||||| | || || || ||||||| Sbjct 1835425 CAACAACGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGCCGTACATTGTCCGATTAC 1835484 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || || ||||| || || ||||||||||| || || Sbjct 1835485 AATATCCAAAAGGAATCAACATTACATTTGGTATT 1835519 >seq6000 Length=1279 Score = 96.9 bits (106), Expect = 2e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 23710 GAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAA 23769 |||||| |||| ||||||||||||||||| || ||||||||||| ||| ||||||| | Sbjct 1279 GAAGGTATACCACCAGATCAACAGCGTTTGATTTTTGCCGGCAAGCAATTGGAAGATGGC 1220 Query 23770 CGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || || || |||| || || || ||||| || || ||||| || || || || Sbjct 1219 CGTACATTGAGCGACTATAATATCCAAAAGGAATCAACATTGCACTTGGTCTT 1167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337908775433300