Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq193 152 1e-31 seq17930 143 6e-29 seq28 143 6e-29 seq16411 98.7 2e-15 seq318 98.7 2e-15 >seq193 Length=1219868 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | || | ||| ||||||||||| | ||||| ||| |||||| Sbjct 521008 ACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCTCAAAGT 521067 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | || || ||||| || || | ||||||||| || || |||||||| Sbjct 521068 ACGACCATCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGGAATACC 521127 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || |||||||||||||| ||| || ||||||||||||||| | ||| || || || Sbjct 521128 CTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCGATGGTGTCTGATGGTTCAACTTCCAA 521187 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || ||||| ||||| ||||| | || | |||||| Sbjct 521188 AGTGATGGTTTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 521229 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||||||||| | || || ||| |||||| | || ||||||| ||| || || Sbjct 521489 GTTGATTCTTTTTGAATGTTATAGTCGCTCAAAGTACGACCGTCTTCTAACTGTTTACCG 521548 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 ||||| || | || ||||| || || ||||||||||| |||||||||||||| ||| Sbjct 521549 GCGAAAATCAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATCTTGGCCTTG 521608 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| ||| ||||||||||| | ||| || || || ||||| |||||||| ||||| ||| Sbjct 521609 ACATTTTCAATGGTGTCTGATGGTTCAACTTCCAATGTGATGGTCTTGCCAGTCAATGTT 521668 Query 225697 TTTATGAACACTTGCAT 225713 || | || | |||||| Sbjct 521669 TTGACAAAGATTTGCAT 521685 Score = 140 bits (154), Expect = 8e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||| ||||||| ||| || ||| ||| || | |||||||| | ||||| || Sbjct 520091 GTTGATTCCTTTTGGATATTATAGTCGCTCAATGTACGGCCATCTTCCAATTGCTTGCCG 520150 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || || || | || ||||| || |||||||||||||| ||||||||||| || ||| Sbjct 520151 GCAAAAATCAAACGCTGTTGATCTGGCGGAATACCTTCTTTGTCTTGGATTTTAGCCTTG 520210 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 || ||||||||||||||| | ||| || || || ||||| || || || ||||| ||| Sbjct 520211 ACGTTTTCGATGGTGTCTGATGGTTCAACCTCCAAAGTGATGGTTTTTCCGGTCAATGTT 520270 Query 225697 TTTATGAACACTTGCAT 225713 || | ||| | |||||| Sbjct 520271 TTGACGAAAATTTGCAT 520287 Score = 140 bits (154), Expect = 8e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||||||||| | || || |||| ||||| | || ||||||| ||| || || Sbjct 520596 GTTGATTCTTTTTGAATGTTATAGTCGGATAAAGTGCGACCGTCTTCTAACTGTTTACCG 520655 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 ||||| || | || ||||| || || ||||||||||| |||||||||||||| ||| Sbjct 520656 GCGAAAATCAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATCTTGGCCTTG 520715 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| ||| ||||||||||| | ||| || || || ||||| || || || ||||| ||| Sbjct 520716 ACATTTTCAATGGTGTCTGATGGTTCAACTTCCAATGTGATGGTTTTTCCAGTCAATGTT 520775 Query 225697 TTTATGAACACTTGCAT 225713 || | || | |||||| Sbjct 520776 TTGACAAAGATTTGCAT 520792 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || ||| | || | || ||||| || || | ||||| ||| ||| || Sbjct 521236 ACGAAGACGCAAGACCAAATGCAATGTTGATTCCTTCTGAATGTTGTAGTCGCTCAATGT 521295 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| | || || || ||||| || | || ||||| || || |||||||| Sbjct 521296 ACGACCGTCTTCCAATTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGAATACC 521355 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| |||||||||||||| ||| || ||||||||||||||| | ||| || || || Sbjct 521356 TTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCGATGGTGTCTGATGGTTCAACTTCCAA 521415 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| ||||| ||||| | || | |||||| Sbjct 521416 AGTGATGGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 521457 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | || | ||| ||||||||||| | || || ||| |||||| Sbjct 521692 ACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTATAGTCGCTCAAAGT 521751 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | || || || || || || | || |||||||| || ||||| || Sbjct 521752 ACGACCATCTTCCAATTGTTTACCGGCAAAAATCAAACGCTGTTGGTCTGGTGGAATTCC 521811 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| |||||||||||||| ||| ||| ||| ||||||||||| | ||| || || || Sbjct 521812 TTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCGACCTCCAA 521871 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || || ||||| ||||| | || | |||||| Sbjct 521872 AGTGATGGTTTTTCCGGTCAATGTTTTCACAAAAATTTGCAT 521913 Score = 120 bits (132), Expect = 7e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | || | ||| ||||||||||| | || || ||| |||||| Sbjct 520799 ACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTATAGTCGCTCAAAGT 520858 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | || || ||||| || || | ||||||||| || || |||||||| Sbjct 520859 ACGACCATCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGGAATACC 520918 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTC 225662 ||| |||||||||||||| ||| ||| ||| ||||||||||| | ||| Sbjct 520919 TTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTC 520969 Score = 109 bits (120), Expect = 1e-18 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 225589 CGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATG 225648 |||||||| || || |||||||| || |||||||||||||| ||| || ||||||| Sbjct 520440 CGTTGTTGATCTGGTGGAATACCCTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCGATG 520499 Query 225649 GTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACT 225708 |||||||| | ||| || || || ||||| |||||||| ||||| ||||| | || | | Sbjct 520500 GTGTCTGATGGTTCAACTTCCAAAGTGATGGTCTTGCCAGTCAATGTTTTGACAAAAATT 520559 Query 225709 TGCAT 225713 ||||| Sbjct 520560 TGCAT 520564 Score = 100 bits (110), Expect = 7e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | || | ||| ||||||||||| | ||||| ||| |||||| Sbjct 520294 ACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCTCAAAGT 520353 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | || || ||||| || || | ||||||||| || || |||||||| Sbjct 520354 ACGACCATCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGGAATACC 520413 Query 225612 TTCCTTGTCTTGGATCTT 225629 || |||||||||||||| Sbjct 520414 CTCTTTGTCTTGGATCTT 520431 >seq17930 Length=2109152 Score = 143 bits (158), Expect = 6e-29 Identities = 156/206 (76%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||| ||||||| ||||||||||| ||| || | |||||||| | || || || Sbjct 1835504 GTTGATTCCTTTTGGATATTGTAATCGGACAATGTACGGCCATCTTCCAATTGTTTACCG 1835445 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || || || | ||||||||||| || ||||| ||||| ||||||||||| || ||| Sbjct 1835444 GCAAAAATCAAACGTTGTTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATTTTAGCCTTG 1835385 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| |||||| ||||| || | || || || | ||||| |||||||| || | |||| Sbjct 1835384 ACATTTTCGATTGTGTCGGATGGCTCGACTTCAAGTGTGATAGTCTTGCCGGTTAGAGTT 1835325 Query 225697 TTTATGAACACTTGCAT-TTTATGGT 225721 || | ||| | |||||| ||| |||| Sbjct 1835324 TTAACGAAAATTTGCATCTTTCTGGT 1835299 >seq28 Length=2173237 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||||| || ||||| ||||| | ||||| |||| ||| || Sbjct 1270000 ACGAAGACGGAGAACCAAATGGAGTGTTGATTCCTTTTGAATGTTGTAGTCGGACAATGT 1269941 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | || || ||||| ||||| | |||||||| || || ||||| || Sbjct 1269940 ACGACCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCC 1269881 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||||||| || ||| ||| |||||| |||||||| | ||| || || | Sbjct 1269880 TTCCTTGTCTTGGATTTTGGCCTTGACATTTTCGATAGTGTCTGACGGTTCGACTTCGAG 1269821 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| ||||| | ||||| | ||| | ||||| Sbjct 1269820 AGTGATAGTCTTACCCGTGAGGGTTTTAACGAAAATCTGCAT 1269779 >seq16411 Length=4717 Score = 98.7 bits (108), Expect = 2e-15 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||| || ||||||||||| |||||||||||||| | || || || || || |||| Sbjct 623 TTCAGGGTGTCCAAAAAATCAAAATAAATGTTGATATAAAATTGGGTCTCCCCCTCCTGC 564 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 |||||||||||| |||||| ||||||| |||||||| Sbjct 563 TGGATCAAAAAATGAAGTATTTAAATTTCGGTCAGTTAA 525 >seq318 Length=2229815 Score = 98.7 bits (108), Expect = 2e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| |||||||||||||| || || || ||||| || || || ||||| || |||||||| Sbjct 1475427 GAAAATTTGACCATCAGTGATTGAAATGACATTGGTTGGAATGTAAGCTGATACATCACC 1475486 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAA 4578 |||||||| || | ||| || || ||||| | || |||||||||||| Sbjct 1475487 AGCTTGTGTCTCAATAACTGGCAAAGCTGTCAACGAACCACCACCAAAA 1475535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192157238985650