Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq317 271 7e-68 >seq317 Length=2337800 Score = 271 bits (300), Expect = 7e-68 Identities = 564/830 (68%), Gaps = 21/830 (3%) Strand=Plus/Minus Query 4263 TATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATA 4322 |||||| || || ||||| ||||||||||||||||||| ||| ||||| ||||||||| Sbjct 1453418 TATTCGCCGACACGTTTTTCAAAGAAATTAGTTTTGCCTTGTAATGAAATGTTTTCCATA 1453359 Query 4323 AAATCAAACGGATTAGTTGCGTTG--TAATGTTTTTCA---CACTTTAGAGCTACAAGCA 4377 || | ||| ||||| | | || ||||| || || || || ||| ||| || Sbjct 1453358 AATTTAAATGGATTCTTGACCATGAATAATGGTTCGCAGCCCAATTC---GCT-CAA-CA 1453304 Query 4378 ATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATC 4437 | || || || |||||||| || ||| | ||| | || || || || | | | Sbjct 1453303 AACGATCGGCAACAAATTCAATGTACGTACACATATCAGCACAATTCATGCCCAACATTG 1453244 Query 4438 TCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATAT 4497 || || | || || ||||| || | ||| || || ||||| | || |||| Sbjct 1453243 AAACTGGCAATGCAACCGTTAAAAATTCCTTTTCAATGCGAACCGCTTCAGCAATAATAT 1453184 Query 4498 CTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAAT 4557 || |||| |||||||| | ||| | ||| ||||| |||||| ||||||| Sbjct 1453183 TGCGTACACGTTCTTGTGATGGTTTTTGTACAACATATTTAAACATTAAACATGCAAAAT 1453124 Query 4558 CACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTA 4617 ||||||||| || || || | ||| | ||| || ||||| ||||| |||||||||| Sbjct 1453123 CACAATGCATGCCCTCATCACGTGAAATTAATTCATTGGAAAATGTTAAACCGGGCATTA 1453064 Query 4618 AACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTA 4677 ||| | ||||| | |||||| |||| ||||| || ||| || || ||||| | Sbjct 1453063 GACCACGTTTTTTCAACCAAAAAATAGATGCAAAGCTACCGCTAAAAAAAATCCCTTCAA 1453004 Query 4678 CGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTA 4737 | || ||||| || || | || || || | | | |||| |||||||| || Sbjct 1453003 CAGCTGCAAATGCAACAACACGTTCACCAAATGTGGCCGTTTTGCTGCCAATCCATTGTA 1452944 Query 4738 ATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAAT---T 4794 ||||||| | || || || ||||| || || | || | || || ||||| || | Sbjct 1452943 ATGCCCAATCGGCCTTCTTTTTAACACATGGCAACGTTTCGATGGCATTAAACAAAAAAT 1452884 Query 4795 TACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAAT 4854 ||| || |||| ||| | ||| | ||||| ||| || ||||||||||| | Sbjct 1452883 TACGTTCTTCATC---GTCACGTGCATACTGTTGTATTAATAGACTGTACATTTCAGAGT 1452827 Query 4855 GTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTT 4914 | | |||||| || || || ||||| || |||||| | | ||||| ||||||||||| | Sbjct 1452826 GCACATTTTCAATGGCCATTTGAAAGCCATAAAAGAAACGTGCTTCAGTTACTTGAACCT 1452767 Query 4915 CGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACG 4974 | | | ||| | ||| ||||| ||||| || || || || || || |||||||| | Sbjct 1452766 CTTGGCTAAAACGTTCAACTAAATTTTCATTGACGATGCCATCGGATGCAGCAAAAAAGG 1452707 Query 4975 CCAAAACATGAGATAT-AAAGTACTGTTCGTCAGGCTTAAGT---TTTTTCCAGTGGGGC 5030 |||| ||||| ||| ||| ||| |||| || || | | || ||||| || | Sbjct 1452706 CCAACACATGCTTTATGAAATTAC-GTTCATCTTCGTTCATTTTATTGTTCCAATGATCC 1452648 Query 5031 AAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGC 5080 | ||| || || || |||||||||||||| |||||||| || ||||| || Sbjct 1452647 ATATCCTTTGTCAAGTCAACTTCTTCAACTGTCCAAAATGATGCTTCTGC 1452598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426922215775175