Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_030929.1 Length=49033 Score E Sequences producing significant alignments: (Bits) Value seq21826 140 1e-28 seq1108 116 1e-21 >seq21826 Length=596 Score = 140 bits (154), Expect = 1e-28 Identities = 152/201 (76%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 33082 CTGTACCAATTCCGTACCAGTTTTAACCCTGGTCTGTAGCTTCTCCAACTCGCTCCAATC 33141 ||||||||||| |||||| | | ||| | | |||||| | | |||| ||| || Sbjct 121 CTGTACCAATTTTGTACCACTC---AAGCTGTTTTCGAGCTTCCCGAGTTCGCCCCAGTC 177 Query 33142 CGAGGCGGAGTTCAGCCACTTGGCATAGGTCGATAGCAGCATCTGCACGCTGTGGCCTAG 33201 | | |||||| | ||| |||||||||||| |||| |||||| |||||||| || || Sbjct 178 GGTGCTGGAGTTGATCCATCGGGCATAGGTCGAGAGCAACATCTGAACGCTGTGACCCAG 237 Query 33202 CTGTCCAGCGATAAACGCAGGGTTCATGCCAGCCATCAGGCACATGGTCGCGTATGTGTG 33261 ||| || ||||||||||||||||| || ||||| ||||||||||| ||||||||||| Sbjct 238 CTGAGTGGCAATAAACGCAGGGTTCATACCCGCCATGAGGCACATGGTAGCGTATGTGTG 297 Query 33262 GCGGGTGTCATACTGCCGGCG 33282 ||| || || ||||| || Sbjct 298 TCGGCAGTTGTATTGCCGACG 318 >seq1108 Length=709 Score = 116 bits (128), Expect = 1e-21 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 33176 AGCAGCATCTGCACGCTGTGGCCTAGCTGTCCAGCGATAAACGCAGGGTTCATGCCAGCC 33235 ||||||| |||||||||||| || || || | ||||| || || ||||||||||| ||| Sbjct 267 AGCAGCACCTGCACGCTGTGCCCGAGTTGCGCGGCGATGAATGCCGGGTTCATGCCGGCC 326 Query 33236 ATCAGGCACATGGTCGCGTATGTGTGGCGGGTGTCATACTGCCGGCG 33282 | |||||||||||||||||| |||||||| ||||| ||| ||| ||| Sbjct 327 ACCAGGCACATGGTCGCGTACGTGTGGCGCGTGTCGTACAGCCTGCG 373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156738432200250