Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_030940.1 Length=32637 Score E Sequences producing significant alignments: (Bits) Value seq13097 102 2e-17 >seq13097 Length=521 Score = 102 bits (112), Expect = 2e-17 Identities = 258/390 (66%), Gaps = 2/390 (1%) Strand=Plus/Plus Query 31618 CAGTTCGCGCATCGCCGCTGTTGCCAGAAAGCCCGACCGAGACTGATA-GCGCTTATCCA 31676 ||| || ||| |||||| | || | ||| || || | ||| ||| ||||| || Sbjct 133 CAGCTCATGCAGCGCCGCCGCGGCTAAAAATCCTGATCTGGACGCATAAGCGCTG-TCTT 191 Query 31677 CCTTCACGCGCTCATCGATCCGCTGCAGAAGGTGTTCCGGGAGCGTCGCATTAAAGCGTA 31736 | |||||||| ||||| || || | || || ||| || | | ||| |||||||| | Sbjct 192 CTTTCACGCGATCATCTATGCGTTTGAGGAGACCTTCTGGTAAAGACGCGTTAAAGCGAA 251 Query 31737 CGGCCTTGCCCAGGTACGGGGTCACGTCGAAGTCAACCACCGCCCATACGCCACCTTCGA 31796 | | ||| || ||| ||||| |||||||| || || | ||||| | |||| | | Sbjct 252 CCGACTTCCCATAGTAGGGGGTGACGTCGAATTCTACGAAAGCCCAGATGCCATCGGCAT 311 Query 31797 AGTCCGGATTCTTCATATGGGCGTCAACGTCCTGCGGCTGGGGTAGCTCTTCGCCGTCCG 31856 | |||| | |||| ||||| || | | || || || || || || || || Sbjct 312 AAGCCGGGTCCTTCCTATGGATTTCGATATTTTGAGGTTGCGGCAGAGGCTCTCCATCTT 371 Query 31857 TAACCAAGCCTTCGAAGTGCAAGGCCAGCGCCTCTTCTACATTGGCCAGGGCCTCGGACA 31916 ||||| ||||| ||||||| | | ||| || || | | || || || | Sbjct 372 CTACCAAACCTTCAAAGTGCATCTCTAACGCGAGTTGGACTTCGCTCAATGCTTCATCGA 431 Query 31917 CCGTAGCGCCGGCAGAGAAGCAACCCGGCACATCGGGCACAGTCACGCCATAGTCAGAAT 31976 ||| |||| ||||||||||| ||||| || || || || ||||| || ||||| || | Sbjct 432 TCGTTTCGCCAGCAGAGAAGCAGCCCGGTACGTCTGGAACTGTCACTCCGTAGTCGGAGT 491 Query 31977 CAGGGTCTTTGTGTAACACCACGGGGAATT 32006 | |||||||| || || || ||| ||| Sbjct 492 CTTCATCTTTGTGCAAAACAACTGGGTATT 521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104286481300050