Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq28 105 2e-17 >seq28 Length=2173237 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || | ||| || || || || ||||| |||||||| |||| || || | ||||| Sbjct 1269991 GAGAACCAAATGGAGTGTTGATTCCTTTTGAATGTTGTAGTCGGACAATGTACGACCATC 1269932 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| | ||| || || ||||| | | || || || | | ||||||||||| || Sbjct 1269931 TTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCCTTGTC 1269872 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||| ||||| |||||| | || | ||||||| || ||||| ||||| ||||| Sbjct 1269871 TTGGATTTTGGCCTTGACATTTTCGATAGTGTCTGACGGTTCGACTTCGAGAGTGATAGT 1269812 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| || || ||||| | |||||| Sbjct 1269811 CTTACCCGTGAGGGTTTTAACGAAAATCTGCAT 1269779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153458978022725