Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq193 116 3e-21 seq17930 111 1e-19 >seq193 Length=1219868 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||||||||| ||||| ||||||||||| || ||||| ||||| Sbjct 521229 ATGCAAATTTTTGTCAAAACATTGACTGGCAAAACCATCACTTTGGAAGTTGAACCATCA 521170 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | | | | || || || || |||||||| || |||| |||||| Sbjct 521169 GACACCATCGAAAACGTTAAGGCCAAGATCCAAGACAAAGAGGGTATTCCACCAGATCAA 521110 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | | |||| ||| || ||||||||||||||| | ||| || ||| || || Sbjct 521109 CAACGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTGAGCGACTACAAC 521050 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||||||||| || | ||||| || |||||||| || ||||| Sbjct 521049 ATTCAAAAAGAATCAACTTTGCATTTGGTATTGCGTCTTCGTGGTGG 521003 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||| ||||| |||||||| |||||||| || |||| ||||| Sbjct 521913 ATGCAAATTTTTGTGAAAACATTGACCGGAAAAACCATCACTTTGGAGGTCGAACCATCA 521854 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || || || || ||||||||||| |||| || ||| Sbjct 521853 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATTCCACCAGACCAA 521794 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | | |||| ||| || ||||||||||||||| | ||| || ||| ||||| Sbjct 521793 CAGCGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGTCGTACTTTGAGCGACTATAAC 521734 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||||||||| || | ||||| || |||||||| || ||||| Sbjct 521733 ATTCAAAAAGAATCAACTTTGCATTTGGTATTGCGTCTTCGTGGTGG 521687 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 111193 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111252 ||||||||||| |||| ||||||||| | | |||| ||| || |||||||||||| Sbjct 520927 GACAAAGAAGGTATTCCACCAGATCAACAACGATTGATTTTTGCTGGTAAACAATTGGAA 520868 Query 111253 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTG 111312 ||| | ||| || ||| ||||| || ||||||||||| || | ||||| || ||| Sbjct 520867 GATGGTCGTACTTTGAGCGACTATAACATTCAAAAAGAATCAACTTTGCATTTGGTATTG 520808 Query 111313 CGTCTGCGCGGTGG 111326 ||||| || ||||| Sbjct 520807 CGTCTTCGTGGTGG 520794 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 111193 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111252 |||||||| || |||| ||||||||| | | |||| ||| || |||||||||||| Sbjct 520422 GACAAAGAGGGTATTCCACCAGATCAACAACGATTGATTTTTGCTGGTAAACAATTGGAA 520363 Query 111253 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTG 111312 ||| | ||| || ||| || || || ||||||||||| || | ||||| || ||| Sbjct 520362 GATGGTCGTACTTTGAGCGACTACAACATTCAAAAAGAATCAACTTTGCATTTGGTATTG 520303 Query 111313 CGTCTGCGCGGTGG 111326 ||||| || ||||| Sbjct 520302 CGTCTTCGTGGTGG 520289 >seq17930 Length=2109152 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 111096 AAAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACC 111155 ||| ||||||||||| || ||||| | |||||||| || || || | ||| || || Sbjct 1835304 AAAGATGCAAATTTTCGTTAAAACTCTAACCGGCAAGACTATCACACTTGAAGTCGAGCC 1835363 Query 111156 CAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGA 111215 ||| | | | | || || ||||| |||||||||||| |||| || Sbjct 1835364 ATCCGACACAATCGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGCATTCCACCAGA 1835423 Query 111216 TCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 111275 |||||| | | |||| ||| || ||||||||||||||| || || ||||||| Sbjct 1835424 CCAACAACGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGCCGTACATTGTCCGATTA 1835483 Query 111276 TAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||||| ||||| ||||| ||| ||||||| || |||||||| || ||||| Sbjct 1835484 CAATATCCAAAAGGAATCAACATTACATTTGGTATTGCGTCTTCGTGGTGG 1835534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421685378332600