Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq317 327 1e-84 >seq317 Length=2337800 Score = 327 bits (362), Expect = 1e-84 Identities = 567/815 (70%), Gaps = 13/815 (2%) Strand=Plus/Minus Query 23223 ATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATTTTCCAT 23282 |||||| || |||||| |||| || ||||| || || || | |||||| || |||||||| Sbjct 1453419 ATATTCGCCGACACGTTTTTCAAAGAAATTAGTTTTGCCTTGTAATGAAATGTTTTCCAT 1453360 Query 23283 AAAATCAAATGGATTAGA-AGTATTATATACAGCTTTACATGATAATTCCTTTAAAAGCC 23341 ||| | ||||||||| | || | ||| | || || ||||| | || | | Sbjct 1453359 AAATTTAAATGGATTCTTGACCATGA-ATAATGGTTCGCAGCCCAATTCGCTCAACAAAC 1453301 Query 23342 TATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATTAGTTTTA 23401 ||| || ||||||||||| || |||||| | || | || || || | | | | Sbjct 1453300 GATCGGCAACAAATTCAATGTACGTACACATATCAGCACAATTCATGCCCAACATTGAAA 1453241 Query 23402 CTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTATTTGAA 23461 |||| | ||| | ||| ||| ||||||||| ||| || || ||| || | Sbjct 1453240 CTGGCAATGCAACCGTTAAAAATTCCTTTTCAATGCGAACCGCTTCAGCAATAATATTGC 1453181 Query 23462 CAATAACTTCTTCACTAGGTGGATATTTTAAA---TACTTAAACAATAAACATGCAAAAT 23518 | | ||||| | ||| | || || | || ||||||| |||||||||||||| Sbjct 1453180 GTACACGTTCTTGT---GATGGTTTTTGTACAACATATTTAAACATTAAACATGCAAAAT 1453124 Query 23519 CACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTA 23578 ||||||| | ||| ||||| | ||| |||||||| ||||||||||| || ||||||| Sbjct 1453123 CACAATGCATGCCCTCATCACGTGAAATTAATTCATTGGAAAATGTTAAACCGGGCATTA 1453064 Query 23579 ATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAA 23638 || |||||||| | |||||| || | ||||| ||| ||| ||||| || |||| Sbjct 1453063 GACCACGTTTTTTCAACCAAAAAATAGATGCAAAGCTACCGCTAAAAAAAATCCCTTCAA 1453004 Query 23639 CAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAttttt 23698 |||| ||||| || |||| |||| ||||||||| || | | |||||||| | Sbjct 1453003 CAGCTGCAAATGCAACAACACGTTCACCAAATGTGGCCGTTTTGCTGCCAATCCATTGTA 1452944 Query 23699 ttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGAAAAG 23758 || ||||| |||||| ||| ||||| | ||||| || || || || | |||| Sbjct 1452943 ATGCCCAATCGGCCTTCTTTTTAACACATGGCAACGTTTCGATGGCATTAAACAAAAAAT 1452884 Query 23759 TTTTTTCTTCATTATCTGTTATATA-TGTATCAATTAGTAAACTATACATTTCAGAATGA 23817 | |||||||| || | ||| ||| | |||| || ||| ||||||||||| || Sbjct 1452883 TACGTTCTTCATCGTCACGTGCATACTGT-TGTATTAATAGACTGTACATTTCAGAGTGC 1452825 Query 23818 ATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCA 23877 | ||||||||| || || ||||| |||||||| | | ||||||| | |||||| || Sbjct 1452824 ACATTTTCAATGGCCATTTGAAAGCCATAAAAGAAACGTGCTTCAGTTACTTGAACCTCT 1452765 Query 23878 TTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCA 23937 | ||| | || | |||||||||| || || || ||||| |||||||| || || Sbjct 1452764 TGGCTAAAACGTTCAACTAAATTTTCATTGACGATGCCATCGGATGCAGCAAAAAAGGCC 1452705 Query 23938 AGAACATATTTTATAAAATGTCTTTCATC--AGTTGATAAT-TTTTTCCAATCATTAATA 23994 | |||| ||||| |||| | |||||| ||| || | || ||||||| || ||| Sbjct 1452704 AACACATGCTTTATGAAATTACGTTCATCTTCGTTCATTTTATTGTTCCAATGATCCATA 1452645 Query 23995 TCTTTTGATAAATCAACTTCATCAACTGTCCAAAA 24029 || |||| || |||||||| |||||||||||||| Sbjct 1452644 TCCTTTGTCAAGTCAACTTCTTCAACTGTCCAAAA 1452610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521328457265000