Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq193 93.3 3e-14 seq28 89.7 4e-13 >seq193 Length=1219868 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||||||||| || || ||| | | || | || |||| ||||| |||||||| Sbjct 520097 TCCTTTTGGATATTATAGTCGCTCAATGTACGGCCATCTTCCAATTGCTTGCCGGCAAAA 520156 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 ||||||||||| ||||||| || | |||||| || || || || ||| | || Sbjct 520157 ATCAAACGCTGTTGATCTGGCGGAATACCTTCTTTGTCTTGGATTTTAGCCTTGACGTTT 520216 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | |||||||| | | ||| ||||||| || || || ||||| || | || || ||| Sbjct 520217 TCGATGGTGTCTGATGGTTCAACCTCCAAAGTGATGGTTTTTCCGGTCAATGTTTTGACG 520276 Query 44327 AAGATTTGCAT 44337 || |||||||| Sbjct 520277 AAAATTTGCAT 520287 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 || ||||| ||||| || |||| | ||| |||| || | ||| || ||||| || Sbjct 520602 TCTTTTTGAATGTTATAGTCGGATAAAGTGCGACCGTCTTCTAACTGTTTACCGGCGAAA 520661 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 ||||||||||| ||||||| || | |||||| || || ||||| ||| | || Sbjct 520662 ATCAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATCTTGGCCTTGACATTT 520721 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | |||||||| | | ||| || |||| || || || ||||| || | || || || Sbjct 520722 TCAATGGTGTCTGATGGTTCAACTTCCAATGTGATGGTTTTTCCAGTCAATGTTTTGACA 520781 Query 44327 AAGATTTGCAT 44337 ||||||||||| Sbjct 520782 AAGATTTGCAT 520792 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| || |||||||| ||| | | || |||| |||| || || ||||| || Sbjct 521267 TCCTTCTGAATGTTGTAGTCGCTCAATGTACGACCGTCTTCCAATTGTTTACCGGCGAAA 521326 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 ||||||||||| ||||||| || | |||||| || || ||||| ||| | || Sbjct 521327 ATCAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATCTTGGCCTTAACGTTT 521386 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | |||||||| | | ||| || |||| || || ||||| || || | || || || Sbjct 521387 TCGATGGTGTCTGATGGTTCAACTTCCAAAGTGATGGTCTTGCCAGTCAATGTTTTGACA 521446 Query 44327 AAGATTTGCAT 44337 || |||||||| Sbjct 521447 AAAATTTGCAT 521457 >seq28 Length=2173237 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 |||||||| |||||||| |||| | | || | || |||| || || || |||||| Sbjct 1269969 TCCTTTTGAATGTTGTAGTCGGACAATGTACGACCATCTTCCAATTGTTTACCAGCAAAG 1269910 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 || ||||| || ||||||| || | |||||||| || || || ||| | || Sbjct 1269909 ATTAAACGTTGTTGATCTGGTGGAATTCCTTCCTTGTCTTGGATTTTGGCCTTGACATTT 1269850 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | || ||||| | | ||| || || | || || ||||| ||||||||||| || ||| Sbjct 1269849 TCGATAGTGTCTGACGGTTCGACTTCGAGAGTGATAGTCTTACCCGTGAGGGTTTTAACG 1269790 Query 44327 AAGATTTGCATG 44338 || || |||||| Sbjct 1269789 AAAATCTGCATG 1269778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359883018801075