Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq33 84.2 3e-11 seq15 84.2 3e-11 >seq33 Length=1400293 Score = 84.2 bits (92), Expect = 3e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 50713 TATCCTGTCAATGTTATCAAAGATCAGCTGATATGGGTTTAGGCGTTCCTTTCAACGTAG 50772 |||| ||||||| ||||| | ||||| |||||||||||||| || || ||||| | | Sbjct 741753 TATCATGTCAATTGTATCAGCGGTCAGCCGATATGGGTTTAGGTGTACCATTCAATATTG 741694 Query 50773 CTTCTTACGCTTTATTAACGTATTTGATCGCTCAAGCCGTCGATATGAAACCGGGAGAAT 50832 | || |||| ||| || || |||| ||||| | | ||||||| || || | Sbjct 741693 CAAGCTATGCTTCATTGACATACATGATTGCTCATGTTACTGGCTTGAAACCAGGCGATT 741634 Query 50833 TTATTCATACGTTAGGAGACGCTCATATTTACCTCGATCACGTCGATGCTTTAAAG 50888 | || ||||| | || || |||||| |||| ||| |||| | || | |||||| Sbjct 741633 TCATCCATACAATTGGCGATGCTCATGTTTATCTCAATCATATTGAACCATTAAAG 741578 >seq15 Length=1065370 Score = 84.2 bits (92), Expect = 3e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 63745 ATACCAGAAATAGGTGATAAATTTGCTTCTTTTACAGCTCAAAAAGGTACGTGTGGTATG 63804 |||||| |||| |||||||||||||| ||| | | ||||| ||||| || ||||| Sbjct 194255 ATACCACAAATTGGTGATAAATTTGCGTCTCGTCATGGGCAAAAGGGTACATGCGGTATT 194196 Query 63805 ATTTATCGACAAGAAGATATGCCTTTTACCAAAGACGGTATCGTACCCGATCTCGTCATC 63864 || |||| ||||| ||||| || || || ||| | ||||||| || |||| Sbjct 194195 CAATACAGACACGAAGACATGCCATTCACATGCGAAGGTTTAACACCCGATATCATCATA 194136 Query 63865 AATCCACACGCTTTTCCCAGTCGTATGAC 63893 ||||||||||| |||| ||| ||||| Sbjct 194135 AATCCACACGCCATTCCGTCTCGGATGAC 194107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 666871116681000