Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq193 149 2e-30 seq28 134 3e-26 seq17930 131 4e-25 >seq193 Length=1219868 Score = 149 bits (164), Expect = 2e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| |||||||| | || |||||||| ||||| | ||||| ||| |||||| Sbjct 521910 CAAATTTTTGTGAAAACATTGACCGGAAAAACCATCACTTTGGAGGTCGAACCATCAGAC 521851 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| ||||| || |||||||||||||| || || ||||| || Sbjct 521850 ACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATTCCACCAGACCAACAG 521791 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || ||||| ||||| | |||||||| | ||| | ||| |||||| | Sbjct 521790 CGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGTCGTACTTTGAGCGACTATAACATT 521731 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 |||||||||||||| ||||| | || ||| Sbjct 521730 CAAAAAGAATCAACTTTGCATTTGGTATTG 521701 Score = 140 bits (154), Expect = 8e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| | || |||||||| ||||| | || || ||| |||||| Sbjct 520789 CAAATCTTTGTCAAAACATTGACTGGAAAAACCATCACATTGGAAGTTGAACCATCAGAC 520730 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| ||||| || ||||||||||| || || || || || || Sbjct 520729 ACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAACAG 520670 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || |||||||| |||||| | ||||| || | ||| | |||| |||||| | Sbjct 520669 CGTTTGATTTTCGCCGGTAAACAGTTAGAAGACGGTCGCACTTTATCCGACTATAACATT 520610 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||||||||||||| ||||| | ||| Sbjct 520609 CAAAAAGAATCAACATTGCATTTGGTT 520583 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| | || |||||||| ||||| | ||||| ||| |||||| Sbjct 520284 CAAATTTTCGTCAAAACATTGACCGGAAAAACCATCACTTTGGAGGTTGAACCATCAGAC 520225 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| || || || ||||||||||| || || || || || || Sbjct 520224 ACCATCGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCGCCAGATCAACAG 520165 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || ||||| || || | |||||||| | || | ||| ||||| || Sbjct 520164 CGTTTGATTTTTGCCGGCAAGCAATTGGAAGATGGCCGTACATTGAGCGACTATAATATC 520105 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| ||||||||| ||||| | ||| Sbjct 520104 CAAAAGGAATCAACATTGCATTTGGTT 520078 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| | || || ||||| ||||| | || || ||| |||||| Sbjct 521226 CAAATTTTTGTCAAAACATTGACTGGCAAAACCATCACTTTGGAAGTTGAACCATCAGAC 521167 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || ||||| || |||||||| || || || || || || ||| Sbjct 521166 ACCATCGAAAACGTTAAGGCCAAGATCCAAGACAAAGAGGGTATTCCACCAGATCAACAA 521107 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || || || || ||||| | |||||||| | ||| | ||| || ||| | Sbjct 521106 CGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTGAGCGACTACAACATT 521047 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 |||||||||||||| ||||| | || ||| Sbjct 521046 CAAAAAGAATCAACTTTGCATTTGGTATTG 521017 Score = 125 bits (138), Expect = 2e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| | || || || || ||||| | || || ||| |||||| Sbjct 521682 CAAATCTTTGTCAAAACATTGACTGGCAAGACCATCACATTGGAAGTTGAACCATCAGAC 521623 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| ||||| || ||||||||||| || || || || || || Sbjct 521622 ACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAACAG 521563 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || |||||||| |||||| | ||||| || | ||| | ||| |||||| | Sbjct 521562 CGTTTGATTTTCGCCGGTAAACAGTTAGAAGACGGTCGTACTTTGAGCGACTATAACATT 521503 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||||||||||||| ||||| | ||| Sbjct 521502 CAAAAAGAATCAACATTGCATTTGGTT 521476 Score = 113 bits (124), Expect = 1e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| | || || || || ||||| | || || ||| |||||| Sbjct 521454 CAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACTTTGGAAGTTGAACCATCAGAC 521395 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || ||||| || ||||||||||| || || || || || || Sbjct 521394 ACCATCGAAAACGTTAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAACAG 521335 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || |||||||| ||||| | ||||| || | || | ||| || ||| | Sbjct 521334 CGTTTGATTTTCGCCGGTAAACAATTGGAAGACGGTCGTACATTGAGCGACTACAACATT 521275 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || ||||||||| ||||| | || ||| Sbjct 521274 CAGAAGGAATCAACATTGCATTTGGTCTTG 521245 Score = 105 bits (116), Expect = 2e-17 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 177978 TCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGAC 178037 ||||||||||| || || ||||| ||||| || ||||||||||| || || || || Sbjct 520963 TCAGACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGAT 520904 Query 178038 CAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTAT 178097 || |||||| | || || || || ||||| | |||||||| | ||| | ||| ||| Sbjct 520903 CAACAACGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTGAGCGACTAT 520844 Query 178098 AACGTCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||| | |||||||||||||| ||||| | || ||| Sbjct 520843 AACATTCAAAAAGAATCAACTTTGCATTTGGTATTG 520808 >seq28 Length=2173237 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| ||||| || || || ||||| ||||| || ||| |||||| Sbjct 1269782 CAGATTTTCGTTAAAACCCTCACGGGTAAGACTATCACTCTCGAAGTCGAACCGTCAGAC 1269841 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| || || || ||||| |||||||| || || || || ||| Sbjct 1269842 ACTATCGAAAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCACCAGATCAACAA 1269901 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || ||||| | |||||||| | || | |||| || ||| | Sbjct 1269902 CGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGTCGTACATTGTCCGACTACAACATT 1269961 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| ||||||||||| ||| | ||| Sbjct 1269962 CAAAAGGAATCAACACTCCATTTGGTT 1269988 >seq17930 Length=2109152 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| |||||||| || || || || ||||| || || || || || ||| Sbjct 1835311 CAAATTTTCGTTAAAACTCTAACCGGCAAGACTATCACACTTGAAGTCGAGCCATCCGAC 1835370 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| || || || ||||||||||| || || || ||||| ||| Sbjct 1835371 ACAATCGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAACAA 1835430 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || ||||| ||||| | |||||||| | || | ||||||| || || Sbjct 1835431 CGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGCCGTACATTGTCCGATTACAATATC 1835490 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||| ||||||||| | ||| | || ||| Sbjct 1835491 CAAAAGGAATCAACATTACATTTGGTATTG 1835520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203353726823150