Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq202 86.0 5e-12 >seq202 Length=497029 Score = 86.0 bits (94), Expect = 5e-12 Identities = 177/258 (69%), Gaps = 4/258 (2%) Strand=Plus/Plus Query 18872 AGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAAACCCAGAAAGCC-GAC 18930 ||| || ||||||||| | |||||| | | ||| |||||| | | || | | Sbjct 1197 AGGCATTGATCAGCTGAATGAAGTTATAAACAAAAT-AAAACATTCTCCTAATGATAGGA 1255 Query 18931 GAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATGTC 18990 |||| || || || | ||||| ||| ||||| || ||||| |||||||||||| Sbjct 1256 GAATAATAATGTCAGCATGGAACCCAGTTGATATACCAAAAATGGCTTTACCTCCATGTC 1315 Query 18991 ACACGTTATGT-CAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGA 19049 | ||| ||| |||||||| || || || |||||||| ||||| | || || ||| Sbjct 1316 A-TTGTTTTGTACAGTTTTATGTAAGTAATGGAGAATTATCGTGCCAGTTGTATCAAAGA 1374 Query 19050 TCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTAC 19109 | || ||||| ||||| ||||| || ||||| || ||| |||| | || ||| Sbjct 1375 AGCGCCGACATGGGTCTTGGAGTACCATTTAACATAGCATCGTATTCACTGTTAACTTAC 1434 Query 19110 ATAGTAGCGCATGTTACA 19127 || |||| || |||||| Sbjct 1435 ATGTTAGCTCACGTTACA 1452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399473491127970