Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq202 149 5e-31 >seq202 Length=497029 Score = 149 bits (164), Expect = 5e-31 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 102035 TTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCA 102094 || || |||||||| |||| ||||| ||||||||||| |||||||| ||||||||||| Sbjct 1079 TTGTACTCTGCTCCATAATGTCTCCATTGAAATCCATATACAGGTCCCAGATCTCCTTCT 1020 Query 102095 TCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATG 102154 ||||||||| ||| ||| ||||| ||| | || | ||| ||||||||||| Sbjct 1019 TCTCTGTCAGTAAATCCACAAGAATCTAGGTATGTACGCGAACTATTTGCATCCCAAATA 960 Query 102155 TGCAC-GCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAG 102213 || || | || |||||| |||||| | || |||||| | |||||||| |||| Sbjct 959 TGAACATTCTTCT-CTGATAACTCTTTTGCATTTGTGGATCCTTTTATAAACCATAACAA 901 Query 102214 TTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAA 102264 |||||| || || || |||||||| ||| || |||||||| | |||||| Sbjct 900 TTCTTCTACTACTCCCCTCCAAAACACTTGTTTTGTAGTTAATAATGGAAA 850 Score = 104 bits (114), Expect = 2e-17 Identities = 164/230 (71%), Gaps = 9/230 (4%) Strand=Plus/Minus Query 101746 TAGATTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGG 101805 |||||| || || ||||| | |||| ||||||| || ||||| || ||||||||||| Sbjct 1458 TAGATTTGTAACGTGAGCTAACATGTAAGTTAACAGTGAATACGATGCTATGTTAAATGG 1399 Query 101806 CACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACA 101865 ||||| | ||||| || || ||||||||||| || || || | | ||||| || Sbjct 1398 TACTCCAAGACCCATGTCGGCGCTTCTTTGATACAACTGGCACGATAATTCTCCATTACT 1339 Query 101866 GACATAAAATTG-ACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAA 101924 |||||||| || || || | |||||| || || || ||||||| || || || || Sbjct 1338 TACATAAAACTGTACAAAACA-ATGACATGGAGGTAAAGCCATTTTTGGTATATC---AA 1283 Query 101925 C---ATTCCAAGCACACATTAACATCCTTCTATCTGTAGG-GTTTGTTTT 101970 | ||||| || |||||| || || ||||| |||| | |||||| Sbjct 1282 CTGGGTTCCATGCTGACATTATTATTCTCCTATCATTAGGAGAATGTTTT 1233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361223612374766