Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19]
6,266 sequences; 272,660,569 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq105 152 6e-32
seq305 122 1e-22
>seq105
Length=615523
Score = 152 bits (168), Expect = 6e-32
Identities = 197/272 (72%), Gaps = 0/272 (0%)
Strand=Plus/Minus
Query 53057 TGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTC 53116
||||| || ||| | | | ||||| ||| || || | || | ||| | | |||
Sbjct 157521 TGAATGGAACCATTGTTTGCTATAATTTCATTTTTCATATTTTCGTCCCAAAGATCTCTT 157462
Query 53117 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 53176
|| |||||| ||| | | ||| ||||| |||| ||||||||||| ||||| ||||
Sbjct 157461 TCAGTTAAATCTCGTAATAAATGAGGATTCACTATCTGAAATTCTCCTGACAAAACTCGT 157402
Query 53177 CGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCA 53236
|| || ||||| ||||| || || ||||| | ||| |||||||||||||||||||| ||
Sbjct 157401 CGTGTATAAATGTTACTAGTGTAAGGTTCTATAGATTCATTATTTCCCAAAATTTGCGCG 157342
Query 53237 GTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATT 53296
|| ||||| || ||||| || || | ||| ||| |||||| | |||| | || |||
Sbjct 157341 GTAGATGCTGTTGGCATTGGAGCTATCAACAAAGAATTTCTGACTCCGTGTTTTGCAATT 157282
Query 53297 TTATCTTTTAGAGGTTCCCAATTCCAAAGATC 53328
|| |||||||| | | |||| | ||| | |||
Sbjct 157281 TTTTCTTTTAGCGCTGCCCAGTCCCATAAATC 157250
Score = 113 bits (124), Expect = 5e-20
Identities = 122/162 (75%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 53939 GTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA 53998
||||| || ||| || || || |||||||||| | ||||||||| |||||| |||
Sbjct 156391 GTATATAAAGTTTCGAATTCATCACCCCAAACATCAGCTAATCCAGGAGATTCATGTGGA 156332
Query 53999 CACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAA 54058
|||||||| | ||| | || | ||| |||||||||||||| ||||||||||||||
Sbjct 156331 CACATCAAAGTCCAAACACCATTTTCCAAAACTCGTTTCATAAAAAGATCAGGAATCCAC 156272
Query 54059 AGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100
| ||| ||||| ||||| | ||||| ||| || || |||
Sbjct 156271 AAAGCATAAAATAATTCTCTTGCTCTATTTTCTTCTTTACCT 156230
Score = 109 bits (120), Expect = 7e-19
Identities = 216/314 (69%), Gaps = 12/314 (4%)
Strand=Plus/Minus
Query 54098 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 54157
|| ||||| ||||| ||||| | || | | |||||| | |||||| ||||| | |||
Sbjct 156169 CCAGTATTTTTTTTGAGATCCAAAAATTCAAAAATATCTGCATGCCATGGTTCTAGATAT 156110
Query 54158 ATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 54217
| | | ||||||||||||| |||||||||||||| | |||||||| ||||||||
Sbjct 156109 ACAGCAAATGCTCCAGGCCGTTTATTTCCTCCCTGATCAACATATCTAGCTGTGTTATTG 156050
Query 54218 TAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAG--C 54275
|| || || | ||| || | | ||||| ||| ||||| || || || ||| |
Sbjct 156049 TACACCCTAAGCATCGGTACTAAGCCATTAGATACACCAAGTGTACC--AGCTATTGGTG 155992
Query 54276 TTCCACTGGCACGAAT---AT-TACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAG 54331
| || || || || || || ||| ||| ||| || || || || || |||
Sbjct 155991 TACCTCTAGCTCGTATGCAATGTAC--ATT--TAGTCCAATACCACCAGCTGATTTGCTA 155936
Query 54332 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTA 54391
|| ||||| || | || || |||||||| || || || || ||||| || |||| |
Sbjct 155935 ATCAATGCACACCTCTTCAATGTATCATAAATTCCTTCAATGCTATCTTCAGTCATTGAA 155876
Query 54392 AGTAGAAAACAGCT 54405
|| || ||||| ||
Sbjct 155875 AGAAGGAAACAACT 155862
Score = 100 bits (110), Expect = 3e-16
Identities = 217/319 (68%), Gaps = 12/319 (4%)
Strand=Plus/Minus
Query 53550 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 53609
|||| |||||||||||||| ||| || ||| ||||||||||| ||||| ||||| |
Sbjct 156864 TACCTATAGGTCTATGTCTGAAATTTGACTTTTTGGCTTCTGGAATCGGATAGTAATTGA 156805
Query 53610 TATCTATAATTTTATTGAGGTTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGA 53666
||| |||| ||||| | || | | || ||| |||| ||| | || |||||
Sbjct 156804 CATCAATAACTTTATCCAAATTACAAGTAACGATT--TTTG-TCACCTTTTTAAGTTTTT 156748
Query 53667 GAAAATCAAA----TTG-TCCATCTATT-ACAAACATGTTCAATGCAATAGATGCCAGAT 53720
||||||| || ||| | | ||| |||||||| || | ||||| || |||| ||
Sbjct 156747 GAAAATCGAACGTTTTGTTAGAGGAATTCACAAACATATTAACGGCAATTGAAGCCAAAT 156688
Query 53721 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 53780
| || || || || |||| || | ||| || | | || || || | ||||||||
Sbjct 156687 TGCATACAGCAACTTCATCCGCGCTGGAATACTGAACAACTTCTGTACATAAATTACTAC 156628
Query 53781 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 53840
||| || ||||||| ||||| ||||| |||| || || ||| || ||||| |
Sbjct 156627 TCTTAATTGTTCCTATGTTTTGCTGATTTGACTTTCGATTGCAGTGATCTTTGTAAAGCA 156568
Query 53841 TGAATGGCGTACCAGTTTC 53859
| | || || || || ||
Sbjct 156567 TATACGGGGTTCCTGTCTC 156549
>seq305
Length=1407860
Score = 122 bits (134), Expect = 1e-22
Identities = 132/175 (75%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 24405 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 24464
|| |||||||| || | |||||||| ||||| | ||||| || || | ||| ||
Sbjct 686661 TACGTATCAATTAATAATGAGTACATTTCTGAATGCACATTTTCCATAGCTACTTGGAAG 686720
Query 24465 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTT 24524
|| |||||||| | ||||| || ||||||||||| || ||||||||| | | ||||
Sbjct 686721 CCATAGAAACAACGTGCCTCTGTTATCTGTACTTCCTGACTAAATCGTTCAACAAGATTT 686780
Query 24525 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT 24579
||||| || ||||| ||| |||||||||||| || |||||||| ||| ||||
Sbjct 686781 TCATTGACAATTCCATCAGAGGCTGCAAAAAATGCTAATACATGAGATATGAAAT 686835
Score = 95.1 bits (104), Expect = 1e-14
Identities = 93/119 (78%), Gaps = 1/119 (1%)
Strand=Plus/Plus
Query 24611 ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 24670
||| ||| ||| ||| | ||| ||||| ||||| ||||| || || || || || |||||
Sbjct 686947 ATTTATACCTT-AGAAAGATCAACTTCCTCCACAGTCCAGAAGGAAGCTTCCGCTTTTTT 687005
Query 24671 ATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 24729
|||||| | ||| || ||| | ||||||| ||||| | |||||||||| ||||||||
Sbjct 687006 ATACATTTGCCAAATATCAGGCCATTGAATAGGAAAGACAACAAATCTACGTGGATTTT 687064
Score = 87.8 bits (96), Expect = 2e-12
Identities = 140/199 (70%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 23963 CAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 24022
|| ||| ||||||||||| || |||||| ||| | || ||||||||| ||||| |
Sbjct 686051 CAGTCTGTCTGCGACAAATTCGATATATTGACACATAAGTTTACAATTCATGCCTATCAT 686110
Query 24023 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 24082
|| ||| || | || | || | ||||||||||||||| || || ||| | |||||
Sbjct 686111 TTCAACAGGTAATGCATCTGTTAAAAATTCTTGTTCAATTTCCACAGCATCTTTAATAAT 686170
Query 24083 AGATCTTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACATCAAACATGCG 24140
|| | ||| || | ||| | || ||| |||||||||||| ||||||||
Sbjct 686171 TGACGTAACTCGCTCAGAAGACGGCTTTTGTATAAT--ATGTTTAAACATTAAACATGCA 686228
Query 24141 AAATCGCAGTGTAGACCCT 24159
||||| || |||| ||||
Sbjct 686229 AAATCACAATGTAATCCCT 686247
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593675096755680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |