Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq105 152 6e-32 seq305 122 1e-22 >seq105 Length=615523 Score = 152 bits (168), Expect = 6e-32 Identities = 197/272 (72%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 53057 TGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTC 53116 ||||| || ||| | | | ||||| ||| || || | || | ||| | | ||| Sbjct 157521 TGAATGGAACCATTGTTTGCTATAATTTCATTTTTCATATTTTCGTCCCAAAGATCTCTT 157462 Query 53117 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 53176 || |||||| ||| | | ||| ||||| |||| ||||||||||| ||||| |||| Sbjct 157461 TCAGTTAAATCTCGTAATAAATGAGGATTCACTATCTGAAATTCTCCTGACAAAACTCGT 157402 Query 53177 CGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCA 53236 || || ||||| ||||| || || ||||| | ||| |||||||||||||||||||| || Sbjct 157401 CGTGTATAAATGTTACTAGTGTAAGGTTCTATAGATTCATTATTTCCCAAAATTTGCGCG 157342 Query 53237 GTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATT 53296 || ||||| || ||||| || || | ||| ||| |||||| | |||| | || ||| Sbjct 157341 GTAGATGCTGTTGGCATTGGAGCTATCAACAAAGAATTTCTGACTCCGTGTTTTGCAATT 157282 Query 53297 TTATCTTTTAGAGGTTCCCAATTCCAAAGATC 53328 || |||||||| | | |||| | ||| | ||| Sbjct 157281 TTTTCTTTTAGCGCTGCCCAGTCCCATAAATC 157250 Score = 113 bits (124), Expect = 5e-20 Identities = 122/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 53939 GTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA 53998 ||||| || ||| || || || |||||||||| | ||||||||| |||||| ||| Sbjct 156391 GTATATAAAGTTTCGAATTCATCACCCCAAACATCAGCTAATCCAGGAGATTCATGTGGA 156332 Query 53999 CACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAA 54058 |||||||| | ||| | || | ||| |||||||||||||| |||||||||||||| Sbjct 156331 CACATCAAAGTCCAAACACCATTTTCCAAAACTCGTTTCATAAAAAGATCAGGAATCCAC 156272 Query 54059 AGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 | ||| ||||| ||||| | ||||| ||| || || ||| Sbjct 156271 AAAGCATAAAATAATTCTCTTGCTCTATTTTCTTCTTTACCT 156230 Score = 109 bits (120), Expect = 7e-19 Identities = 216/314 (69%), Gaps = 12/314 (4%) Strand=Plus/Minus Query 54098 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 54157 || ||||| ||||| ||||| | || | | |||||| | |||||| ||||| | ||| Sbjct 156169 CCAGTATTTTTTTTGAGATCCAAAAATTCAAAAATATCTGCATGCCATGGTTCTAGATAT 156110 Query 54158 ATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 54217 | | | ||||||||||||| |||||||||||||| | |||||||| |||||||| Sbjct 156109 ACAGCAAATGCTCCAGGCCGTTTATTTCCTCCCTGATCAACATATCTAGCTGTGTTATTG 156050 Query 54218 TAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAG--C 54275 || || || | ||| || | | ||||| ||| ||||| || || || ||| | Sbjct 156049 TACACCCTAAGCATCGGTACTAAGCCATTAGATACACCAAGTGTACC--AGCTATTGGTG 155992 Query 54276 TTCCACTGGCACGAAT---AT-TACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAG 54331 | || || || || || || ||| ||| ||| || || || || || ||| Sbjct 155991 TACCTCTAGCTCGTATGCAATGTAC--ATT--TAGTCCAATACCACCAGCTGATTTGCTA 155936 Query 54332 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTA 54391 || ||||| || | || || |||||||| || || || || ||||| || |||| | Sbjct 155935 ATCAATGCACACCTCTTCAATGTATCATAAATTCCTTCAATGCTATCTTCAGTCATTGAA 155876 Query 54392 AGTAGAAAACAGCT 54405 || || ||||| || Sbjct 155875 AGAAGGAAACAACT 155862 Score = 100 bits (110), Expect = 3e-16 Identities = 217/319 (68%), Gaps = 12/319 (4%) Strand=Plus/Minus Query 53550 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 53609 |||| |||||||||||||| ||| || ||| ||||||||||| ||||| ||||| | Sbjct 156864 TACCTATAGGTCTATGTCTGAAATTTGACTTTTTGGCTTCTGGAATCGGATAGTAATTGA 156805 Query 53610 TATCTATAATTTTATTGAGGTTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGA 53666 ||| |||| ||||| | || | | || ||| |||| ||| | || ||||| Sbjct 156804 CATCAATAACTTTATCCAAATTACAAGTAACGATT--TTTG-TCACCTTTTTAAGTTTTT 156748 Query 53667 GAAAATCAAA----TTG-TCCATCTATT-ACAAACATGTTCAATGCAATAGATGCCAGAT 53720 ||||||| || ||| | | ||| |||||||| || | ||||| || |||| || Sbjct 156747 GAAAATCGAACGTTTTGTTAGAGGAATTCACAAACATATTAACGGCAATTGAAGCCAAAT 156688 Query 53721 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 53780 | || || || || |||| || | ||| || | | || || || | |||||||| Sbjct 156687 TGCATACAGCAACTTCATCCGCGCTGGAATACTGAACAACTTCTGTACATAAATTACTAC 156628 Query 53781 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 53840 ||| || ||||||| ||||| ||||| |||| || || ||| || ||||| | Sbjct 156627 TCTTAATTGTTCCTATGTTTTGCTGATTTGACTTTCGATTGCAGTGATCTTTGTAAAGCA 156568 Query 53841 TGAATGGCGTACCAGTTTC 53859 | | || || || || || Sbjct 156567 TATACGGGGTTCCTGTCTC 156549 >seq305 Length=1407860 Score = 122 bits (134), Expect = 1e-22 Identities = 132/175 (75%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 24405 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 24464 || |||||||| || | |||||||| ||||| | ||||| || || | ||| || Sbjct 686661 TACGTATCAATTAATAATGAGTACATTTCTGAATGCACATTTTCCATAGCTACTTGGAAG 686720 Query 24465 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTT 24524 || |||||||| | ||||| || ||||||||||| || ||||||||| | | |||| Sbjct 686721 CCATAGAAACAACGTGCCTCTGTTATCTGTACTTCCTGACTAAATCGTTCAACAAGATTT 686780 Query 24525 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT 24579 ||||| || ||||| ||| |||||||||||| || |||||||| ||| |||| Sbjct 686781 TCATTGACAATTCCATCAGAGGCTGCAAAAAATGCTAATACATGAGATATGAAAT 686835 Score = 95.1 bits (104), Expect = 1e-14 Identities = 93/119 (78%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 24611 ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 24670 ||| ||| ||| ||| | ||| ||||| ||||| ||||| || || || || || ||||| Sbjct 686947 ATTTATACCTT-AGAAAGATCAACTTCCTCCACAGTCCAGAAGGAAGCTTCCGCTTTTTT 687005 Query 24671 ATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 24729 |||||| | ||| || ||| | ||||||| ||||| | |||||||||| |||||||| Sbjct 687006 ATACATTTGCCAAATATCAGGCCATTGAATAGGAAAGACAACAAATCTACGTGGATTTT 687064 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 23963 CAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 24022 || ||| ||||||||||| || |||||| ||| | || ||||||||| ||||| | Sbjct 686051 CAGTCTGTCTGCGACAAATTCGATATATTGACACATAAGTTTACAATTCATGCCTATCAT 686110 Query 24023 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 24082 || ||| || | || | || | ||||||||||||||| || || ||| | ||||| Sbjct 686111 TTCAACAGGTAATGCATCTGTTAAAAATTCTTGTTCAATTTCCACAGCATCTTTAATAAT 686170 Query 24083 AGATCTTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACATCAAACATGCG 24140 || | ||| || | ||| | || ||| |||||||||||| |||||||| Sbjct 686171 TGACGTAACTCGCTCAGAAGACGGCTTTTGTATAAT--ATGTTTAAACATTAAACATGCA 686228 Query 24141 AAATCGCAGTGTAGACCCT 24159 ||||| || |||| |||| Sbjct 686229 AAATCACAATGTAATCCCT 686247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593675096755680