Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq467 118 9e-22 seq307 87.8 2e-12 seq459 82.4 7e-11 >seq467 Length=2555529 Score = 118 bits (130), Expect = 9e-22 Identities = 155/213 (73%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || ||| | || |||||||| || || ||||| || ||| ||| || | Sbjct 1366343 AATGCAGATCTTCGTAAAGACATTGACTGGAAAGACCATCACTCTTGAAGTTGAAGCCTC 1366284 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | || |||| |||||| |||||||| ||| | || ||| || Sbjct 1366283 AGACACTATTGAAAATGTTAAAGCTAAAATTCAGGATAAAGAGGGTATTCCTCCAGACCA 1366224 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTAC 29138 ||||||||| ||||| || ||||||||| |||||||| | | | ||| | || ||| Sbjct 1366223 ACAAAGACTGATCTTCGCTGGCAAACAATTGGAAGATGGACGCACATTAT--CTGACTAC 1366166 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTG 29171 |||||||| |||||||||||||||||| | ||| Sbjct 1366165 AATATTCAAAAGGAATCTACTCTTCACCTTGTG 1366133 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || ||| | || |||||||| || || ||||| || |||| |||| | | Sbjct 1366115 AATGCAGATCTTCGTAAAGACATTGACTGGAAAGACCATCACTCTCGAAGTGGAAGCATC 1366056 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | || |||| |||||| || ||||||||| | || |||||| Sbjct 1366055 AGATACAATTGAAAATGTTAAAGCCAAAATTCAGGACAAAGAAGGTATTCCTCCAGATCA 1365996 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||||||| | |||||||| || |||||| | |||||| || | |||||||||| Sbjct 1365995 ACAAAGATTGATCTTTGCTGGTAAACAATTAGAAGATGGACGCACGTTATCCGATTACAA 1365936 Query 29141 TATTCAGAAGGAATCTACTCTTCA 29164 |||||| || ||||| || ||||| Sbjct 1365935 TATTCAAAAAGAATCAACCCTTCA 1365912 Score = 89.7 bits (98), Expect = 4e-13 Identities = 94/122 (77%), Gaps = 4/122 (3%) Strand=Plus/Minus Query 29045 AAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAA 29104 ||||||| || |||||||| | || |||||| || ||| | ||||| || || || Sbjct 1364302 AAAAATTCAAGACAAAGAAGGCATTCCACCAGATCAGCAGAGATTAATCTTCGCTGGTAA 1364243 Query 29105 ACAACTGGAAGAT--TCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTT 29162 ||||||||||||| || | ||| | | ||||||||||||||||| ||||||||||| Sbjct 1364242 ACAACTGGAAGATGGTCGTACACTTT--CTGATTACAATATTCAGAAAGAATCTACTCTC 1364185 Query 29163 CA 29164 || Sbjct 1364184 CA 1364183 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| |||||| | ||||| | || || ||||| || ||| ||| || | | Sbjct 1364842 AATGCAGATATTCGTGAAAACCCTTACTGGAAAAACTATAACCTTGGAAGTTGAGGCATC 1364783 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | ||| |||||| || ||||||||| | || |||||| Sbjct 1364782 TGACACCATTGAGAATGTAAAGGCTAAAATTCAGGACAAAGAAGGTATTCCTCCAGATCA 1364723 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||||||| | |||||||| || |||||| | |||||| || | |||||||||| Sbjct 1364722 ACAAAGATTGATCTTTGCTGGTAAACAATTAGAAGATGGACGCACGTTATCCGATTACAA 1364663 Query 29141 TATTCAGAAGGAATCTACTCTTCA 29164 |||||| || ||||| || ||||| Sbjct 1364662 TATTCAAAAAGAATCAACCCTTCA 1364639 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | || ||||||||||| |||||||| ||| ||| || | || Sbjct 1366570 ATGCAGATTTTCGTAAAGACATTGACGGGAAAAACCATAACCCTCGAGGTTGAGGCATCA 1366511 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || |||| |||||| |||||||| || | || |||||| Sbjct 1366510 GACACCATCGAGAATGTTAAAGCAAAAATCCAGGATAAAGAGGGCATCCCACCAGATCAG 1366451 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 || ||| | ||||| || || |||||| | |||||| | | ||| | | || |||| Sbjct 1366450 CAGAGATTGATCTTCGCTGGTAAACAATTAGAAGATGGACGCACACTTT--CTGACTACA 1366393 Query 29140 ATATTCAGAAGGAATCTACTCTTCAC 29165 |||| || ||||||||||| |||||| Sbjct 1366392 ATATACAAAAGGAATCTACACTTCAC 1366367 >seq307 Length=2169461 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || |||| ||| | || || |||||||| ||| ||| ||| | | Sbjct 1514524 AATGCAAATCTTTGTCAAGACACTCACAGGGAAAACCATCACCCTGGAAGTCGAAGCTTC 1514583 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| ||| | | || | || || || ||||||||||| | || ||||| Sbjct 1514584 AGATACGATAGAGAATGTCAAAGCTAAGATCCAAGATAAAGAAGGAATTCCTCCTGATCA 1514643 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| || | |||||||| || || || ||||||||| | || | | ||||| || Sbjct 1514644 GCAACGATTAATCTTTGCTGGAAAGCAGCTGGAAGATGGAAGGACACTTTCAGATTATAA 1514703 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||| || ||||| || |||||| | ||| | || | |||||||| Sbjct 1514704 TATTCAAAAAGAATCAACACTTCACCTTGTGCTGAGACTTCGAGGAGG 1514751 >seq459 Length=558815 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 || ||||||||| | || ||||| || || ||| |||||||| | |||| || | ||| Sbjct 439489 GACCAACAAAGATTAATTTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTGTCAGAT 439430 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || |||||||| ||||||||||| | || | || ||||| ||| |||| || Sbjct 439429 TATAATATTCAAAAGGAATCTACATTGCATTTAGTCTTACGTTTAAGAGGTGG 439377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428303289318230