Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq307 84.2 2e-11 >seq307 Length=2169461 Score = 84.2 bits (92), Expect = 2e-11 Identities = 167/246 (68%), Gaps = 1/246 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| ||||| || || || |||| ||| | ||||| || |||||||||||||| || | Sbjct 1509863 TTCCTCCTCGAAGTCTTAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTATAATCTG 1509804 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||| || | || || ||||| || || ||| | || | || |||||||| | Sbjct 1509803 ACAGTGTCCTTCCATCTTCGAGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAG 1509744 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | || || ||||| |||||| || || | | | ||||| | || Sbjct 1509743 GGATTCCCTCTTTGTCCTGGATCTTCGCCTTGACATTCTCTATCGTATCTGAAGCTTCGA 1509684 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT-TTTGAATCTC 21185 ||||| ||| |||||||| || || | || |||||||| || ||||| |||||| || Sbjct 1509683 CTTCCAGGGTGATGGTCTTCCCTGTAAGTGTCTTGACAAAGATCTGCATATTTGAAGATC 1509624 Query 21186 TTATAA 21191 | |||| Sbjct 1509623 TAATAA 1509618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422226953384456