Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19]
6,266 sequences; 272,660,569 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq307 84.2 2e-11
>seq307
Length=2169461
Score = 84.2 bits (92), Expect = 2e-11
Identities = 167/246 (68%), Gaps = 1/246 (0%)
Strand=Plus/Minus
Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006
|||| ||||| || || || |||| ||| | ||||| || |||||||||||||| || |
Sbjct 1509863 TTCCTCCTCGAAGTCTTAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTATAATCTG 1509804
Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066
||| || | || || ||||| || || ||| | || | || |||||||| |
Sbjct 1509803 ACAGTGTCCTTCCATCTTCGAGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAG 1509744
Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126
| | || || ||||| |||||| || || | | | ||||| | ||
Sbjct 1509743 GGATTCCCTCTTTGTCCTGGATCTTCGCCTTGACATTCTCTATCGTATCTGAAGCTTCGA 1509684
Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT-TTTGAATCTC 21185
||||| ||| |||||||| || || | || |||||||| || ||||| |||||| ||
Sbjct 1509683 CTTCCAGGGTGATGGTCTTCCCTGTAAGTGTCTTGACAAAGATCTGCATATTTGAAGATC 1509624
Query 21186 TTATAA 21191
| ||||
Sbjct 1509623 TAATAA 1509618
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422226953384456
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |