Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq467 122 7e-23 seq459 91.5 1e-13 seq307 91.5 1e-13 >seq467 Length=2555529 Score = 122 bits (134), Expect = 7e-23 Identities = 156/213 (73%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| || ||| | || |||||||| || || ||||| || ||| ||| || | Sbjct 1366343 AATGCAGATCTTCGTAAAGACATTGACTGGAAAGACCATCACTCTTGAAGTTGAAGCCTC 1366284 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | || | || |||||| |||||||| ||| | || ||| || Sbjct 1366283 AGACACTATTGAAAATGTTAAAGCTAAAATTCAGGATAAAGAGGGTATTCCTCCAGACCA 1366224 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTAC 25211 ||||||||| ||||| || |||||||||||||||||| | | | ||| | || ||| Sbjct 1366223 ACAAAGACTGATCTTCGCTGGCAAACAATTGGAAGATGGACGCACATTAT--CTGACTAC 1366166 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTG 25244 ||||||||||||||||||||||||||| | ||| Sbjct 1366165 AATATTCAAAAGGAATCTACTCTTCACCTTGTG 1366133 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| || ||| | || |||||||| || || ||||| || |||| |||| | | Sbjct 1366115 AATGCAGATCTTCGTAAAGACATTGACTGGAAAGACCATCACTCTCGAAGTGGAAGCATC 1366056 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | || | || |||||| || ||||||||| | || |||||| Sbjct 1366055 AGATACAATTGAAAATGTTAAAGCCAAAATTCAGGACAAAGAAGGTATTCCTCCAGATCA 1365996 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||||||| | |||||||| || |||||||| |||||| || | |||||||||| Sbjct 1365995 ACAAAGATTGATCTTTGCTGGTAAACAATTAGAAGATGGACGCACGTTATCCGATTACAA 1365936 Query 25214 TATTCAAAAGGAATCTACTCTTCA 25237 ||||||||| ||||| || ||||| Sbjct 1365935 TATTCAAAAAGAATCAACCCTTCA 1365912 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| |||||| | ||||| | || || ||||| || ||| ||| || | | Sbjct 1364842 AATGCAGATATTCGTGAAAACCCTTACTGGAAAAACTATAACCTTGGAAGTTGAGGCATC 1364783 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | ||| |||||| || ||||||||| | || |||||| Sbjct 1364782 TGACACCATTGAGAATGTAAAGGCTAAAATTCAGGACAAAGAAGGTATTCCTCCAGATCA 1364723 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||||||| | |||||||| || |||||||| |||||| || | |||||||||| Sbjct 1364722 ACAAAGATTGATCTTTGCTGGTAAACAATTAGAAGATGGACGCACGTTATCCGATTACAA 1364663 Query 25214 TATTCAAAAGGAATCTACTCTTCA 25237 ||||||||| ||||| || ||||| Sbjct 1364662 TATTCAAAAAGAATCAACCCTTCA 1364639 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| | || ||||||||||| |||||||| ||| ||| || | || Sbjct 1366570 ATGCAGATTTTCGTAAAGACATTGACGGGAAAAACCATAACCCTCGAGGTTGAGGCATCA 1366511 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | || |||||| |||||||| || | || |||||| Sbjct 1366510 GACACCATCGAGAATGTTAAAGCAAAAATCCAGGATAAAGAGGGCATCCCACCAGATCAG 1366451 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATT--CCAAAACTATGGCCGATTACA 25212 || ||| | ||||| || || |||||||| |||||| | | ||| | | || |||| Sbjct 1366450 CAGAGATTGATCTTCGCTGGTAAACAATTAGAAGATGGACGCACACTTT--CTGACTACA 1366393 Query 25213 ATATTCAAAAGGAATCTACTCTTCAC 25238 |||| |||||||||||||| |||||| Sbjct 1366392 ATATACAAAAGGAATCTACACTTCAC 1366367 Score = 89.7 bits (98), Expect = 4e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 25131 AAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT 25190 ||||||||| | || ||||||||||||| | |||||||| || |||||||| |||||| Sbjct 1365092 AAAGAAGGTATTCCTCCAGATCAACAAAGATTGATCTTTGCTGGTAAACAATTAGAAGAT 1365033 Query 25191 TCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237 || | ||||||||||||||||||| ||||| || ||||| Sbjct 1365032 GGACGCACGTTATCCGATTACAATATTCAAAAAGAATCAACCCTTCA 1364986 >seq459 Length=558815 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 || ||||||||| | || ||||| || || |||||||||||| | |||| || | ||| Sbjct 439489 GACCAACAAAGATTAATTTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTGTCAGAT 439430 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || |||||||||||||||||||| | || | || ||||| ||| |||| || Sbjct 439429 TATAATATTCAAAAGGAATCTACATTGCATTTAGTCTTACGTTTAAGAGGTGG 439377 >seq307 Length=2169461 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || |||| ||| | || || |||||||| ||| ||| ||| | | Sbjct 1514524 AATGCAAATCTTTGTCAAGACACTCACAGGGAAAACCATCACCCTGGAAGTCGAAGCTTC 1514583 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| ||| | | || |||| || || ||||||||||| | || ||||| Sbjct 1514584 AGATACGATAGAGAATGTCAAAGCTAAGATCCAAGATAAAGAAGGAATTCCTCCTGATCA 1514643 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| || | |||||||| || || || |||||||| | || | | ||||| || Sbjct 1514644 GCAACGATTAATCTTTGCTGGAAAGCAGCTGGAAGATGGAAGGACACTTTCAGATTATAA 1514703 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||||| ||||| || |||||| | ||| | || | |||||||| Sbjct 1514704 TATTCAAAAAGAATCAACACTTCACCTTGTGCTGAGACTTCGAGGAGG 1514751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410765428732124