Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq307 111 2e-19 seq467 102 8e-17 seq321 82.4 8e-11 >seq307 Length=2169461 Score = 111 bits (122), Expect = 2e-19 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || || ||||| || |||||||||||| | || |||||||| | Sbjct 1510090 AATGCAAATCTTCGTCAAGACTCTCACAGGAAAAACCATCACCCTGGAAGTCGAAGCTTC 1510149 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | ||| | |||| || || | ||||||||||| ||||| | ||||| Sbjct 1510150 TGACACAATTGAAAATGTAAAGGCGAAGATCCAGGACAAAGAGGGAATCCCTCCAGACCA 1510209 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACG--AGCGCACCCTCAACGACTAC 40866 ||||||| | |||| || || || ||||| || || | || ||| ||| || || Sbjct 1510210 GCAACGATTAATCTTTGCAGGGAAGCAGCTCGAAGATGGAAGGACACTGTCA--GATTAT 1510267 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| || || || |||| || ||||| || Sbjct 1510268 AACATTCAAAAAGAATCCACACTTCATCTGGT 1510299 Score = 111 bits (122), Expect = 2e-19 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || || ||||| || |||||||||||| | || |||||||| | Sbjct 1510318 AATGCAAATCTTCGTCAAGACTCTCACAGGAAAAACCATCACCCTGGAAGTCGAAGCTTC 1510377 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | ||| | |||| || || | ||||||||||| ||||| | ||||| Sbjct 1510378 TGACACAATTGAAAATGTAAAGGCGAAGATCCAGGACAAAGAGGGAATCCCTCCAGACCA 1510437 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACG--AGCGCACCCTCAACGACTAC 40866 ||||||| | |||| || || || ||||| || || | || ||| ||| || || Sbjct 1510438 GCAACGATTAATCTTTGCAGGGAAGCAGCTCGAAGATGGAAGGACACTGTCA--GATTAT 1510495 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| || || || |||| || ||||| || Sbjct 1510496 AACATTCAAAAAGAATCCACACTTCATCTGGT 1510527 Score = 111 bits (122), Expect = 2e-19 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || || ||||| || |||||||||||| | || |||||||| | Sbjct 1514752 AATGCAAATCTTCGTCAAGACTCTCACAGGAAAAACCATCACCCTGGAAGTCGAAGCTTC 1514811 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | ||| | |||| || || | ||||||||||| ||||| | ||||| Sbjct 1514812 TGACACAATTGAAAATGTAAAGGCGAAGATCCAGGACAAAGAGGGAATCCCTCCAGACCA 1514871 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACG--AGCGCACCCTCAACGACTAC 40866 ||||||| | |||| || || || ||||| || || | || ||| ||| || || Sbjct 1514872 GCAACGATTAATCTTTGCAGGGAAGCAGCTCGAAGATGGAAGGACACTGTCA--GATTAT 1514929 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| || || || |||| || ||||| || Sbjct 1514930 AACATTCAAAAAGAATCCACACTTCATCTGGT 1514961 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || || ||||| || |||||||||||| | || |||||||| | Sbjct 1515671 AATGCAAATCTTCGTCAAGACTCTCACAGGAAAAACCATCACCCTGGAAGTCGAAGCTTC 1515730 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | || || | ||||||||||| || || | || || Sbjct 1515731 TGACACAATAGAGAATGTCAAAGCTAAGATCCAGGACAAAGAGGGAATACCTCCAGATCA 1515790 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||||| | |||| || || || ||||| || || | | | || ||| || ||||| Sbjct 1515791 GCAACGATTAATCTTTGCAGGAAAGCAGCTCGAAGATGGGAGGACACTCTCTGATTACAA 1515850 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| || || || |||| || ||||| || Sbjct 1515851 CATTCAAAAAGAATCCACACTTCATCTGGT 1515880 Score = 107 bits (118), Expect = 2e-18 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || || ||||| || ||||||||||| | || |||||||| | Sbjct 1509862 AATGCAAATCTTCGTGAAGACACTCACAGGGAAAACCATCACTCTGGAAGTCGAAGCTTC 1509921 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | ||| | |||| || || | ||||||||||| ||||| | ||||| Sbjct 1509922 TGACACAATTGAAAATGTAAAGGCGAAGATCCAGGACAAAGAGGGAATCCCTCCAGACCA 1509981 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACG--AGCGCACCCTCAACGACTAC 40866 ||||||| | |||| || || || ||||| || || | || ||| ||| || || Sbjct 1509982 GCAACGATTAATCTTTGCAGGGAAGCAGCTCGAAGATGGAAGGACACTGTCA--GATTAT 1510039 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| || || || |||| || ||||| || Sbjct 1510040 AACATTCAAAAAGAATCCACACTTCATCTGGT 1510071 Score = 107 bits (118), Expect = 2e-18 Identities = 127/172 (74%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || || ||||| || |||||||||||| | || |||||||| | Sbjct 1514980 AATGCAAATCTTCGTCAAGACTCTCACAGGAAAAACCATCACCCTGGAAGTCGAAGCTTC 1515039 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | ||| | |||| ||| || | ||||||||||| ||||| | ||||| Sbjct 1515040 TGACACAATTGAAAATGTAAAGGCAAAGATCCAGGACAAAGAGGGAATCCCTCCAGACCA 1515099 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAAC 40860 ||||||| | |||| || || || ||||| || || | | || |||||| Sbjct 1515100 GCAACGATTAATCTTTGCAGGGAAGCAGCTCGAAGATGGAAGGACACTCAAC 1515151 Score = 107 bits (118), Expect = 2e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || || || || ||||| || ||||||||||| | || |||||||| | Sbjct 1515215 AATGCAAATCTTTGTCAAGACACTCACAGGGAAAACCATCACTCTGGAAGTCGAAGCTTC 1515274 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | ||| | |||| ||| || | ||||||||||| || ||| | | || Sbjct 1515275 TGACACAATTGAAAATGTAAAGGCAAAGATCCAGGACAAAGAGGGAATTCCCCCTCATCA 1515334 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||||| | |||| || || ||||| || || || | | || ||| || ||||| Sbjct 1515335 GCAACGATTAATCTTTGCTGGGAAACAACTTGAAGATGGAAGGACACTCTCTGATTACAA 1515394 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 ||| || || || |||| || ||||| || ||| Sbjct 1515395 CATTCAAAAAGAATCCACACTTCATCTGGTTTTG 1515428 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || || ||||| || ||||| |||||| | || || |||||| | Sbjct 1515443 AATGCAAATCTTCGTGAAGACTCTCACAGGGAAAACTATCACCCTAGAAGTGGAAGCCTC 1515502 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | || || | |||||||| || || || | ||||| Sbjct 1515503 AGACACAATAGAGAATGTCAAAGCTAAGATCCAAGACAAAGAAGGAATTCCTCCAGACCA 1515562 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||||| | |||| || || || ||||| || || | | | || || || || || Sbjct 1515563 GCAACGATTAATCTTTGCAGGAAAGCAGCTCGAAGATGGGAGGACACTGTCAGATTATAA 1515622 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| || || || |||| || ||||| || Sbjct 1515623 CATTCAAAAAGAATCCACCCTTCATCTGGT 1515652 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || || ||||| || ||||| |||||| | || || |||||| | Sbjct 1510546 AATGCAAATCTTCGTGAAGACTCTCACAGGGAAAACTATCACCCTAGAAGTGGAAGCCTC 1510605 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | || || | |||||||| || || || | ||||| Sbjct 1510606 AGACACAATAGAGAATGTCAAAGCTAAGATCCAAGACAAAGAAGGAATTCCTCCAGACCA 1510665 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACG--AGCGCACCCTCAACGACTAC 40866 ||||||| | |||| || || || ||||| || || | || ||| ||| || || Sbjct 1510666 GCAACGATTAATCTTTGCAGGGAAGCAGCTCGAAGATGGAAGGACACTGTCA--GATTAT 1510723 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| || || || |||| || ||||| || Sbjct 1510724 AACATTCAAAAAGAATCCACACTTCATCTGGT 1510755 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || || || || || || || ||||||||| | || |||||||| Sbjct 1509631 AAATATGCAGATCTTTGTCAAGACACTTACAGGGAAGACCATCACCCTGGAAGTCGAAGC 1509690 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | || | | | | |||||| || || | ||||||||||| ||||| | || Sbjct 1509691 TTCAGATACGATAGAGAATGTCAAGGCGAAGATCCAGGACAAAGAGGGAATCCCTCCAGA 1509750 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACG--AGCGCACCCTCAACGAC 40863 |||||||||| | |||| || || || ||||| || || | || ||| ||| || Sbjct 1509751 CCAGCAACGATTAATCTTTGCAGGGAAGCAGCTCGAAGATGGAAGGACACTGTCA--GAT 1509808 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || ||||| || || || |||| || ||||| || Sbjct 1509809 TATAACATTCAAAAAGAATCCACACTTCATCTGGT 1509843 >seq467 Length=2555529 Score = 102 bits (112), Expect = 8e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| || || || || ||||| || | || || || || | Sbjct 1364613 ATGCAGATCTTTGTGAAAACTCTTACTGGAAAGACCATTACTTTGGAAGTTGAGGCATCA 1364554 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| ||||| | || ||||| ||||||||| | ||||| Sbjct 1364553 GACACTATTGAGAACGTT-AAGGCTAAAATCCAGGATAAAGAAGGCATCCCCCCAGACCA 1364495 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| || | |||| ||| || || ||| | || || | |||||| || |||||||| Sbjct 1364494 GCAAAGATTGATCTTCGCTGGTAAGCAGTTAGAAGATGGGCGCACACTATCTGACTACAA 1364435 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||| ||| | || || ||||| || Sbjct 1364434 CATTCAGAAAGAGTCAACACTCCATCTTGT 1364405 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||||||| || | ||||| |||||||| ||| |||| || || || | Sbjct 1366570 ATGCAGATTTTCGTAAAGACATTGACGGGAAAAACCATAACCCTCGAGGTTGAGGCATCA 1366511 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | || | |||||| | || |||||||||||||| | || ||| Sbjct 1366510 GACACCATCGAGAATGTTAAAGCAAAAATCCAGGATAAAGAGGGCATCCCACCAGATCAG 1366451 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| ||| || ||||| | || || | ||||| || |||||||| Sbjct 1366450 CAGAGATTGATCTTCGCTGGTAAACAATTAGAAGATGGACGCACACTTTCTGACTACAAT 1366391 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || || ||||| | || || || || || Sbjct 1366390 ATACAAAAGGAATCTACACTTCACCTTGT 1366362 >seq321 Length=1097274 Score = 82.4 bits (90), Expect = 8e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| |||||||| ||||| | ||||||||||| ||||| |||| || ||||| | Sbjct 785460 ATGCAGATATTCGTGAAAACTTTGACGGGCAAAACTATCACGCTCGAGGTAGAAGCGTCT 785401 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | ||| | || | ||||||| || ||||| || || || | || || Sbjct 785400 GATACCATCGAAAATGTAAAAGCTAAAATTCAAGATAAAGAAGGAATTCCACCTGATCAA 785341 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||| || ||||| | || || | || |||||| || || || Sbjct 785340 CAGCGTCTAATTTTCGCTGGAAAACAATTAGAAGATGGACGTACCCTCTCTGATTATAAT 785281 Query 40870 ATCCAGAA 40877 |||||||| Sbjct 785280 ATCCAGAA 785273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515178845456160