Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq467 122 8e-23 seq307 107 2e-18 seq321 96.9 3e-15 >seq467 Length=2555529 Score = 122 bits (134), Expect = 8e-23 Identities = 159/214 (74%), Gaps = 7/214 (3%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTCGAGC 118592 ||| | |||||| || ||||| || ||||| || | |||| |||| ||| || | Sbjct 1366367 GTGAAGTGTAGATTCCTTTTGTATATTGTAGTCAG--AAAGTGTGCGTCCATCTTCTAAT 1366424 Query 118593 TGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATT 118652 ||||| |||||| |||| | | ||||||||| || || |||||||| || || ||| Sbjct 1366425 TGTTTACCAGCGAAGATCAATCTCTGCTGATCTGGTGGGATGCCCTCTTTATCCTGGATT 1366484 Query 118653 TTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCC 118711 ||| |||||| | |||| |||||| | ||| ||| ||||||| ||| | ||||| || Sbjct 1366485 TTTGCTTTAACATTCTCGATGGTGTCTGATGC-CTCAACCTCGAGGGTTATGGTTTTTCC 1366543 Query 118712 GGTCAGAGTTTTTACAAAAATCTGCATGGCTTAT 118745 |||| || ||||| ||||||||||||| |||| Sbjct 1366544 CGTCAATGTCTTTACGAAAATCTGCATGG-TTAT 1366576 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| ||| |||||||| ||||||||||| || | |||||| ||| || | Sbjct 1364406 CAAGATGGAGTGTTGACTCTTTCTGAATGTTGTAGTCAGATAGTGTGCGCCCATCTTCTA 1364465 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 ||| || |||||| |||| | | ||||| || || || ||||| || || || | Sbjct 1364466 ACTGCTTACCAGCGAAGATCAATCTTTGCTGGTCTGGGGGGATGCCTTCTTTATCCTGGA 1364525 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTG 118709 |||| ||||| | || | ||||| | ||| ||| || || | || | || || Sbjct 1364526 TTTTAGCCTTAACGTTCTCAATAGTGTCTGATGC-CTCAACTTCCAAAGTAATGGTCTTT 1364584 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || |||||||| ||||| |||||||| Sbjct 1364585 CCAGTAAGAGTTTTCACAAAGATCTGCAT 1364613 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || ||||||||||| ||||||||| | ||||| ||| || | ||||| ||| Sbjct 1364645 GTTGATTCTTTTTGAATATTGTAATCGGATAACGTGCGTCCATCTTCTAATTGTTTACCA 1364704 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | | || ||||| ||||| || || || ||||| |||||| || Sbjct 1364705 GCAAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCCTGAATTTTAGCCTTT 1364764 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | || | |||||| | ||| ||| || || | ||| | ||||| || || || || Sbjct 1364765 ACATTCTCAATGGTGTCAGATGC-CTCAACTTCCAAGGTTATAGTTTTTCCAGTAAGGGT 1364823 Query 118721 TTTTACAAAAATCTGCAT 118738 ||| || || |||||||| Sbjct 1364824 TTTCACGAATATCTGCAT 1364841 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || ||||||||||| ||||||||| | ||||| ||| || | ||||| ||| Sbjct 1365918 GTTGATTCTTTTTGAATATTGTAATCGGATAACGTGCGTCCATCTTCTAATTGTTTACCA 1365977 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | | || ||||| ||||| || || || ||||| |||||| |||| Sbjct 1365978 GCAAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCCTGAATTTTGGCTTTA 1366037 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | ||| | || || | |||| || || |||| || | || || || |||| || Sbjct 1366038 ACATTTTCAATTGTATCTGATGCT-TCCACTTCGAGAGTGATGGTCTTTCCAGTCAATGT 1366096 Query 118721 TTTTACAAAAATCTGCAT 118738 ||||| || |||||||| Sbjct 1366097 CTTTACGAAGATCTGCAT 1366114 >seq307 Length=2169461 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | ||||| |||| || | ||| || |||||||||||||||||||| Sbjct 1515898 CCTCCCCGAAGTCTCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCAGAG 1515839 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || | | ||| |||||||| ||||| || |||| | || |||||||| |||||| Sbjct 1515838 AGTGTCCTCCCATCTTCGAGCTGCTTTCCTGCAAAGATTAATCGTTGCTGATCTGGAGGT 1515779 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690 || ||||| ||||| || || ||| || | || | ||||| | ||| ||||| Sbjct 1515778 ATTCCCTCTTTGTCCTGGATCTTAGCTTTGACATTCTCTATTGTGTCAGAAGCT-TCGAC 1515720 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | ||||| || || ||||| || || || || ||||| Sbjct 1515719 TTCCAGGGTGATGGTTTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 1515672 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | ||||| ||| | ||| | ||| || ||||||||||| || |||| || Sbjct 1514751 CCTCCTCGAAGTCTCAGCACAAGGTGAAGTGTTGATTCTTTTTGAATATTATAAT--CTG 1514694 Query 118572 ATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||| | | ||| || ||||| |||||||| |||| | || |||||||| |||| Sbjct 1514693 AAAGTGTCCTTCCATCTTCCAGCTGCTTTCCAGCAAAGATTAATCGTTGCTGATCAGGAG 1514634 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || || || ||| || || ||| || | || | || || | ||| ||| Sbjct 1514633 GAATTCCTTCTTTATCTTGGATCTTAGCTTTGACATTCTCTATCGTATCTGAAGCT-TCG 1514575 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | ||| | ||||| || || || || || ||||| || ||||| Sbjct 1514574 ACTTCCAGGGTGATGGTTTTCCCTGTGAGTGTCTTGACAAAGATTTGCAT 1514525 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | |||||| |||| || | ||| || ||||||||||||||||||| | Sbjct 1515442 CCTCCTCGAAGTCTCAAAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAAT--CAG 1515385 Query 118572 ATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||| | | ||| || || ||||| ||||| |||| | || ||||||| || | Sbjct 1515384 AGAGTGTCCTTCCATCTTCAAGTTGTTTCCCAGCAAAGATTAATCGTTGCTGATGAGGGG 1515325 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || ||||| ||||| || ||| || || | ||| | ||||| | ||| ||| Sbjct 1515324 GAATTCCCTCTTTGTCCTGGATCTTTGCCTTTACATTTTCAATTGTGTCAGAAGCT-TCG 1515266 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | ||||| || || || || || ||||| || ||||| Sbjct 1515265 ACTTCCAGAGTGATGGTTTTCCCTGTGAGTGTCTTGACAAAGATTTGCAT 1515216 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | ||| | |||| || | ||| || |||||||||||||| |||| || Sbjct 1510317 CCTCCTCGAAGTCTTAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTATAAT--CTG 1510260 Query 118572 ATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||| | | ||| |||||||| || || || |||| | || ||||| || |||| Sbjct 1510259 ACAGTGTCCTTCCATCTTCGAGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAG 1510200 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || ||||| ||||| || || || || | ||| | ||||| | ||| ||| Sbjct 1510199 GGATTCCCTCTTTGTCCTGGATCTTCGCCTTTACATTTTCAATTGTGTCAGAAGCT-TCG 1510141 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | ||| | ||||| || || ||||| || || || || ||||| Sbjct 1510140 ACTTCCAGGGTGATGGTTTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 1510091 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | ||| | |||| || | ||| || |||||||||||||| |||| || Sbjct 1510545 CCTCCTCGAAGTCTTAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTATAAT--CTG 1510488 Query 118572 ATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||| | | ||| |||||||| || || || |||| | || ||||| || |||| Sbjct 1510487 ACAGTGTCCTTCCATCTTCGAGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAG 1510428 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || ||||| ||||| || || || || | ||| | ||||| | ||| ||| Sbjct 1510427 GGATTCCCTCTTTGTCCTGGATCTTCGCCTTTACATTTTCAATTGTGTCAGAAGCT-TCG 1510369 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | ||| | ||||| || || ||||| || || || || ||||| Sbjct 1510368 ACTTCCAGGGTGATGGTTTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 1510319 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | ||| | |||| || | ||| || |||||||||||||| |||| || Sbjct 1514979 CCTCCTCGAAGTCTTAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTATAAT--CTG 1514922 Query 118572 ATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||| | | ||| |||||||| || || || |||| | || ||||| || |||| Sbjct 1514921 ACAGTGTCCTTCCATCTTCGAGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAG 1514862 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || ||||| ||||| || || || || | ||| | ||||| | ||| ||| Sbjct 1514861 GGATTCCCTCTTTGTCCTGGATCTTCGCCTTTACATTTTCAATTGTGTCAGAAGCT-TCG 1514803 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | ||| | ||||| || || ||||| || || || || ||||| Sbjct 1514802 ACTTCCAGGGTGATGGTTTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 1514753 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | ||| | |||| || | || || |||||||||||||| ||||| | Sbjct 1515670 CCTCCTCGAAGTCTTAGAACCAGATGAAGGGTGGATTCTTTTTGAATGTTATAATCTGAC 1515611 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || | | ||| |||||||| ||||| || |||| | || ||||| || ||||| Sbjct 1515610 AGTGTCCTCCCATCTTCGAGCTGCTTTCCTGCAAAGATTAATCGTTGCTGGTCTGGAGGA 1515551 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || || |||||| || || ||| || | || | ||||| | | || || Sbjct 1515550 ATTCCTTCTTTGTCTTGGATCTTAGCTTTGACATTCTCTATTGTGTCTGAGGCTTCCACT 1515491 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | ||||| || || ||||| || || || || ||||| Sbjct 1515490 TCTAGGGTGATAGTTTTCCCTGTGAGAGTCTTCACGAAGATTTGCAT 1515444 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | ||| | |||| || | ||| || |||||||||||||| |||| || Sbjct 1510773 CCTCCTCGAAGTCTTAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTATAAT--CTG 1510716 Query 118572 ATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||| | | ||| |||||||| || || || |||| | || ||||| || |||| Sbjct 1510715 ACAGTGTCCTTCCATCTTCGAGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAG 1510656 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || |||||| || || ||| || | || | ||||| | | || | Sbjct 1510655 GAATTCCTTCTTTGTCTTGGATCTTAGCTTTGACATTCTCTATTGTGTCTGAGGCTTCCA 1510596 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | ||| | ||||| || || ||||| || || || || ||||| Sbjct 1510595 CTTCTAGGGTGATAGTTTTCCCTGTGAGAGTCTTCACGAAGATTTGCAT 1510547 Score = 84.2 bits (92), Expect = 2e-11 Identities = 163/237 (69%), Gaps = 13/237 (5%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | ||||| ||| | ||| | ||| || ||||||||||| || |||| || Sbjct 1515214 CCTCCTCGAAGTCTCAGCACAAGGTGAAGTGTTGATTCTTTTTGAATATTATAAT--CTG 1515157 Query 118572 ATAGTG-CGCGT--------ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGA 118622 | |||| | || ||| |||||||| || || || |||| | || ||||| Sbjct 1515156 AGAGTGTTGAGTGTCCTTCCATCTTCGAGCTGCTTCCCTGCAAAGATTAATCGTTGCTGG 1515097 Query 118623 TCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-T 118681 || ||||| || ||||| ||||| || ||| || || | ||| | ||||| | Sbjct 1515096 TCTGGAGGGATTCCCTCTTTGTCCTGGATCTTTGCCTTTACATTTTCAATTGTGTCAGAA 1515037 Query 118682 GCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||| || | ||| | ||||| || || ||||| || || || || ||||| Sbjct 1515036 GCT-TCGACTTCCAGGGTGATGGTTTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 1514981 >seq321 Length=1097274 Score = 96.9 bits (106), Expect = 3e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 118593 TGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATT 118652 |||||||||||| | || |||||||| ||||| || || || || || || ||| |||| Sbjct 785315 TGTTTTCCAGCGAAAATTAGACGCTGTTGATCAGGTGGAATTCCTTCTTTATCTTGAATT 785374 Query 118653 TTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCC 118711 || ||| || | ||||| ||| || | ||| || ||||||| || | |||||||| Sbjct 785375 TTAGCTTTTACATTTTCGATGGTATCAGACGCT-TCTACCTCGAGCGTGATAGTTTTGCC 785433 Query 118712 GGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| |||||| || || |||||||| Sbjct 785434 CGTCAAAGTTTTCACGAATATCTGCAT 785460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433797269728072