Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19]
6,266 sequences; 272,660,569 total letters
Query= NC_002188.1
Length=288539
Score E
Sequences producing significant alignments: (Bits) Value
seq453 158 2e-33
seq333 84.2 4e-11
>seq453
Length=4956680
Score = 158 bits (174), Expect = 2e-33
Identities = 326/478 (68%), Gaps = 14/478 (3%)
Strand=Plus/Plus
Query 189158 GCTTTGAGTAACTTATCTCCGTGGCTACATTTTGGTCATG-TATCCGCACAACGTGTTGC 189216
||| | || || || ||||| ||| | ||||||||| ||| |||| | ||||||| |||
Sbjct 2751795 GCTCTTAGCAATTTGTCTCCTTGGTTTCATTTTGGT-ATGATATCAGTACAACGT--TGC 2751851
Query 189217 CTT--AGAAGTATTAAAATGTATACGAGAAAGCaaa---aaaaaC-GTTGAAACGTTTAT 189270
|| |||| || | | |||| | ||| | | |||| | |||||| | || ||
Sbjct 2751852 ATTTTAGAAATA----ACGGAATACAAAAAAATACATCCAAAATCTGTTGAATCTTTCAT 2751907
Query 189271 AGATGAAATAATTGTAAGAAGAGAACTATCGGATAATTTTTGTTACTATAACAAACATTA 189330
|| ||| ||| | || |||||||| ||||||||||| | ||| || ||| | ||
Sbjct 2751908 GGAAGAAGCCATTATTCGACGAGAACTAAGCGATAATTTTTGCTTCTACAATAAAAAGTA 2751967
Query 189331 TGATAGTATCCAGTCTACTCATTCATGGGCCAGAAAAACATTAGAAGATCACATTAATGA 189390
|||| ||| | || || | ||| | | | |||||||||| | || || ||
Sbjct 2751968 TGATCTTATTGAAGGAGCTTATCCTTGGACAATAGAAACATTAGATAAACATCGGAAAGA 2752027
Query 189391 TCCTAGAAAGTATATATATTCCATTAAACAACTCGAAAAAGCGGAAACTCATGATCCTCT 189450
| ||||||||| ||||||| | | ||| | ||||| | |||||||||||| | |
Sbjct 2752028 TAAAAGAAAGTATTTATATTCTTTAGACCAATTAGAAAATTCTGAAACTCATGATGATTT 2752087
Query 189451 ATGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGAAT 189510
|||||| || | |||| || ||||| | ||| |||||||| ||||| | ||||
Sbjct 2752088 ATGGAATGCATGTCAAAATCAAATGGTAATGATAGGCAAAATGCACGGTTTTCTGAGAAT 2752147
Query 189511 GTATTGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGAAGACGCTTTGAGTTATAG 189570
||||||||| || || || | ||||||||| | | |||||| || || |
Sbjct 2752148 GTATTGGGCAAAAAAAATTTTAGAATGGACTGAATCTCCTGAAAGTGCCTTACAATGGGC 2752207
Query 189571 TATCTATTTGAACAACAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGGT 189628
||| ||||| || || |||||| |||| ||| |||||||| || || ||||||
Sbjct 2752208 TATTTATTTAAATAATAAGTACAGTATAGATGGCTGTGATCCTAATGGTTATGTAGGT 2752265
Score = 93.3 bits (102), Expect = 8e-14
Identities = 95/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 189624 TAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCGATAT 189683
||||||||||||||||||| || || | || ||| || ||| |||||||| ||||
Sbjct 2752335 TAGGTTGTATGTGGTCTATATGTGGCATTCATGATCAAGGTTGGTCAGAAAGACAAATAT 2752394
Query 189684 TTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGTTGCTGTAT 189743
||||||| |||||||| ||||||||||| | | || |||||||||||| | ||
Sbjct 2752395 TTGGAAAAATAAGATACATGAATTATGAAGGATGCAAACGAAAATTTGATGTTAAAGAAT 2752454
Query 189744 TTAT 189747
||||
Sbjct 2752455 TTAT 2752458
>seq333
Length=991201
Score = 84.2 bits (92), Expect = 4e-11
Identities = 138/194 (71%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 135637 GATCCTGTTTTGCATATAGAACTTAGGAGA-TGGGCGGATGTTTTTATTATAGCGCCCTT 135695
|||||||| ||||| ||||| ||||| | ||||| ||| | || | || || || ||
Sbjct 759967 GATCCTGTATTGCACATAGA-CTTAGTCAAGTGGGCTGATTTGTTCCTAATCGCTCCATT 759909
Query 135696 AACGGCAAATACGTTAGCAAAAATAGCTAATGGTATATGCGATAATTTACTGACGTCTAT 135755
| || || || || | || ||||| | |||||||||||||||| | |||| | | |
Sbjct 759908 AGATGCTAACACATTGGGCAAGATAGCAAGTGGTATATGCGATAATATTTTGACCTGTGT 759849
Query 135756 TGTAAGAGCCTGGGATACAAACAAA-CCACTCATTTTCTGTCCTGCAATGAATACTCTTA 135814
| | || |||||| || | || || | ||||| || ||||| ||||| || |
Sbjct 759848 CGCTCGTGCTTGGGAT-CAGTCGAAGCCTTTGATTTTTTGCCCTGCTATGAACACGAAAA 759790
Query 135815 TGTGGGAACATCCT 135828
||||||||||||||
Sbjct 759789 TGTGGGAACATCCT 759776
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 923124490610640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |