Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq453 158 2e-33 seq333 84.2 4e-11 >seq453 Length=4956680 Score = 158 bits (174), Expect = 2e-33 Identities = 326/478 (68%), Gaps = 14/478 (3%) Strand=Plus/Plus Query 189158 GCTTTGAGTAACTTATCTCCGTGGCTACATTTTGGTCATG-TATCCGCACAACGTGTTGC 189216 ||| | || || || ||||| ||| | ||||||||| ||| |||| | ||||||| ||| Sbjct 2751795 GCTCTTAGCAATTTGTCTCCTTGGTTTCATTTTGGT-ATGATATCAGTACAACGT--TGC 2751851 Query 189217 CTT--AGAAGTATTAAAATGTATACGAGAAAGCaaa---aaaaaC-GTTGAAACGTTTAT 189270 || |||| || | | |||| | ||| | | |||| | |||||| | || || Sbjct 2751852 ATTTTAGAAATA----ACGGAATACAAAAAAATACATCCAAAATCTGTTGAATCTTTCAT 2751907 Query 189271 AGATGAAATAATTGTAAGAAGAGAACTATCGGATAATTTTTGTTACTATAACAAACATTA 189330 || ||| ||| | || |||||||| ||||||||||| | ||| || ||| | || Sbjct 2751908 GGAAGAAGCCATTATTCGACGAGAACTAAGCGATAATTTTTGCTTCTACAATAAAAAGTA 2751967 Query 189331 TGATAGTATCCAGTCTACTCATTCATGGGCCAGAAAAACATTAGAAGATCACATTAATGA 189390 |||| ||| | || || | ||| | | | |||||||||| | || || || Sbjct 2751968 TGATCTTATTGAAGGAGCTTATCCTTGGACAATAGAAACATTAGATAAACATCGGAAAGA 2752027 Query 189391 TCCTAGAAAGTATATATATTCCATTAAACAACTCGAAAAAGCGGAAACTCATGATCCTCT 189450 | ||||||||| ||||||| | | ||| | ||||| | |||||||||||| | | Sbjct 2752028 TAAAAGAAAGTATTTATATTCTTTAGACCAATTAGAAAATTCTGAAACTCATGATGATTT 2752087 Query 189451 ATGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGAAT 189510 |||||| || | |||| || ||||| | ||| |||||||| ||||| | |||| Sbjct 2752088 ATGGAATGCATGTCAAAATCAAATGGTAATGATAGGCAAAATGCACGGTTTTCTGAGAAT 2752147 Query 189511 GTATTGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGAAGACGCTTTGAGTTATAG 189570 ||||||||| || || || | ||||||||| | | |||||| || || | Sbjct 2752148 GTATTGGGCAAAAAAAATTTTAGAATGGACTGAATCTCCTGAAAGTGCCTTACAATGGGC 2752207 Query 189571 TATCTATTTGAACAACAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGGT 189628 ||| ||||| || || |||||| |||| ||| |||||||| || || |||||| Sbjct 2752208 TATTTATTTAAATAATAAGTACAGTATAGATGGCTGTGATCCTAATGGTTATGTAGGT 2752265 Score = 93.3 bits (102), Expect = 8e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 189624 TAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCGATAT 189683 ||||||||||||||||||| || || | || ||| || ||| |||||||| |||| Sbjct 2752335 TAGGTTGTATGTGGTCTATATGTGGCATTCATGATCAAGGTTGGTCAGAAAGACAAATAT 2752394 Query 189684 TTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGTTGCTGTAT 189743 ||||||| |||||||| ||||||||||| | | || |||||||||||| | || Sbjct 2752395 TTGGAAAAATAAGATACATGAATTATGAAGGATGCAAACGAAAATTTGATGTTAAAGAAT 2752454 Query 189744 TTAT 189747 |||| Sbjct 2752455 TTAT 2752458 >seq333 Length=991201 Score = 84.2 bits (92), Expect = 4e-11 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 135637 GATCCTGTTTTGCATATAGAACTTAGGAGA-TGGGCGGATGTTTTTATTATAGCGCCCTT 135695 |||||||| ||||| ||||| ||||| | ||||| ||| | || | || || || || Sbjct 759967 GATCCTGTATTGCACATAGA-CTTAGTCAAGTGGGCTGATTTGTTCCTAATCGCTCCATT 759909 Query 135696 AACGGCAAATACGTTAGCAAAAATAGCTAATGGTATATGCGATAATTTACTGACGTCTAT 135755 | || || || || | || ||||| | |||||||||||||||| | |||| | | | Sbjct 759908 AGATGCTAACACATTGGGCAAGATAGCAAGTGGTATATGCGATAATATTTTGACCTGTGT 759849 Query 135756 TGTAAGAGCCTGGGATACAAACAAA-CCACTCATTTTCTGTCCTGCAATGAATACTCTTA 135814 | | || |||||| || | || || | ||||| || ||||| ||||| || | Sbjct 759848 CGCTCGTGCTTGGGAT-CAGTCGAAGCCTTTGATTTTTTGCCCTGCTATGAACACGAAAA 759790 Query 135815 TGTGGGAACATCCT 135828 |||||||||||||| Sbjct 759789 TGTGGGAACATCCT 759776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923124490610640