Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19]
6,266 sequences; 272,660,569 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq307 91.5 1e-13
>seq307
Length=2169461
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221
||| || || || || || ||||| || | || |||||| || ||||| || || ||
Sbjct 1509862 TCCTCCTCGAAGTCTTAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTATAATCTGA 1509803
Query 34222 CAGCTGACGGTCG-TCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280
||| || | || || || | |||||| ||||| || || | || |||||||| |
Sbjct 1509802 CAG-TGTCCTTCCATCTTCGAGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAG 1509744
Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340
| | | ||| ||||| ||||| ||| | || |||||| ||| | | |||||
Sbjct 1509743 GGATTCCCTCTTTGTCCTGGATCTTCGCCTTGACATTCTCTATCGTATCTGAAGCTTCGA 1509684
Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
| |||| |||||||| || || || || || || ||||||||||||||
Sbjct 1509683 CTTCCAGGGTGATGGTCTTCCCTGTAAGTGTCTTGACAAAGATCTGCAT 1509635
Score = 86.0 bits (94), Expect = 4e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221
||| || || || || || ||||| || | || |||||| || ||||| || || ||
Sbjct 1510090 TCCTCCTCGAAGTCTTAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTATAATCTGA 1510031
Query 34222 CAGCTGACGGTCG-TCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280
||| || | || || || | |||||| ||||| || || | || |||||||| |
Sbjct 1510030 CAG-TGTCCTTCCATCTTCGAGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAG 1509972
Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340
| | | ||| ||||| ||||| ||||| || | || | || | | |||||
Sbjct 1509971 GGATTCCCTCTTTGTCCTGGATCTTCGCCTTTACATTTTCAATTGTGTCAGAAGCTTCGA 1509912
Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
| |||| ||||||||||| || ||||| || ||||| ||||| |||||
Sbjct 1509911 CTTCCAGAGTGATGGTTTTCCCTGTGAGTGTCTTCACGAAGATTTGCAT 1509863
Score = 86.0 bits (94), Expect = 4e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221
||| || || || || || ||||| || | || |||||| || ||||| || || ||
Sbjct 1510318 TCCTCCTCGAAGTCTTAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTATAATCTGA 1510259
Query 34222 CAGCTGACGGTCG-TCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280
||| || | || || || | |||||| ||||| || || | || |||||||| |
Sbjct 1510258 CAG-TGTCCTTCCATCTTCGAGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAG 1510200
Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340
| | | ||| ||||| ||||| ||||| || | || | || | | |||||
Sbjct 1510199 GGATTCCCTCTTTGTCCTGGATCTTCGCCTTTACATTTTCAATTGTGTCAGAAGCTTCGA 1510140
Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
| |||| ||||||||||| || |||||||| || || ||||| |||||
Sbjct 1510139 CTTCCAGGGTGATGGTTTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 1510091
Score = 86.0 bits (94), Expect = 4e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221
||| || || || || || ||||| || | || |||||| || ||||| || || ||
Sbjct 1510546 TCCTCCTCGAAGTCTTAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTATAATCTGA 1510487
Query 34222 CAGCTGACGGTCG-TCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280
||| || | || || || | |||||| ||||| || || | || |||||||| |
Sbjct 1510486 CAG-TGTCCTTCCATCTTCGAGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAG 1510428
Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340
| | | ||| ||||| ||||| ||||| || | || | || | | |||||
Sbjct 1510427 GGATTCCCTCTTTGTCCTGGATCTTCGCCTTTACATTTTCAATTGTGTCAGAAGCTTCGA 1510368
Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
| |||| ||||||||||| || |||||||| || || ||||| |||||
Sbjct 1510367 CTTCCAGGGTGATGGTTTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 1510319
Score = 86.0 bits (94), Expect = 4e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221
||| || || || || || ||||| || | || |||||| || ||||| || || ||
Sbjct 1514980 TCCTCCTCGAAGTCTTAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTATAATCTGA 1514921
Query 34222 CAGCTGACGGTCG-TCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280
||| || | || || || | |||||| ||||| || || | || |||||||| |
Sbjct 1514920 CAG-TGTCCTTCCATCTTCGAGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAG 1514862
Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340
| | | ||| ||||| ||||| ||||| || | || | || | | |||||
Sbjct 1514861 GGATTCCCTCTTTGTCCTGGATCTTCGCCTTTACATTTTCAATTGTGTCAGAAGCTTCGA 1514802
Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
| |||| ||||||||||| || |||||||| || || ||||| |||||
Sbjct 1514801 CTTCCAGGGTGATGGTTTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 1514753
Score = 84.2 bits (92), Expect = 1e-11
Identities = 160/235 (68%), Gaps = 7/235 (3%)
Strand=Plus/Minus
Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221
||| || || || |||||||| ||||| | || |||||| || || || || || ||
Sbjct 1515215 TCCTCCTCGAAGTCTCAGCACAAGGTGAAGTGTTGATTCTTTTTGAATATTATAATCTGA 1515156
Query 34222 CAGC--TGACGGTCGT-----CGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT 34274
|| ||| ||| | | || | |||||| ||||| || || | || |||||||
Sbjct 1515155 GAGTGTTGAGTGTCCTTCCATCTTCGAGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGT 1515096
Query 34275 CGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCG 34334
| || | | ||| ||||| |||||| ||||| || | || | || | |
Sbjct 1515095 CTGGAGGGATTCCCTCTTTGTCCTGGATCTTTGCCTTTACATTTTCAATTGTGTCAGAAG 1515036
Query 34335 ATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||||| |||| ||||||||||| || |||||||| || || ||||| |||||
Sbjct 1515035 CTTCGACTTCCAGGGTGATGGTTTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 1514981
Score = 82.4 bits (90), Expect = 5e-11
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221
||| || || || ||||| ||||| || | || |||||| || |||||||| || ||
Sbjct 1515899 TCCTCCCCGAAGTCTCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCAGA 1515840
Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281
|| | | || || | |||||| ||||| || || | || ||||| || ||
Sbjct 1515839 GAGTGTCCTCCCATCTTCGAGCTGCTTTCCTGCAAAGATTAATCGTTGCTGATCTGGAGG 1515780
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340
| | ||| ||||| ||||| ||||| | || |||| | || | | |||||
Sbjct 1515779 TATTCCCTCTTTGTCCTGGATCTTA-GCTTTGACATTCTCTATTGTGTCAGAAGCTTCGA 1515721
Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
| |||| ||||||||||| || |||||||| || || ||||| |||||
Sbjct 1515720 CTTCCAGGGTGATGGTTTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 1515672
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323047328000960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |