Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq305 100 3e-16 >seq305 Length=1407860 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 16286 AATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCA 16345 || ||||| |||||||| ||||||| || || | ||| || || || ||||| |||| Sbjct 686354 AACGTAAGTCCTGGCATAAGTCCTCTCTTCTTTAACCAGAAAATGGCAGCAAAGCTACCA 686413 Query 16346 GAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAttt 16405 ||||| |||||||| |||||||||||||| || | || ||| | | || || Sbjct 686414 CTGAAGAAAATACCTTCTACTGCGGCAAATGCGACTACACGTTCAGGGAAAGTAGCGGTT 686473 Query 16406 ttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCT 16465 | | | |||||| || |||||||| ||||||| | ||||||| | || || Sbjct 686474 TCATGGTTTATCCAATTCAATGCCCAATTAGCTTTTTTTGCAACACAGGGTAAATTTTCA 686533 Query 16466 ATTGCATTAAATAAA 16480 || |||||||||||| Sbjct 686534 ATGGCATTAAATAAA 686548 Score = 95.1 bits (104), Expect = 1e-14 Identities = 128/176 (73%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 16488 TTTCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547 |||||||| |||| ||| || ||||| |||| ||| |||||||||||||| | || Sbjct 686641 TTTCTTTGGCATCTGCAATGTACGTATCAATTAATAATGAGTACATTTCTGAATGCACAT 686700 Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTT-CAGAG 16606 | ||||| |||| || || ||||| || || | || || | ||| ||||||| | || Sbjct 686701 TTTCCATAGCTACTTGGAAGCCATAGAAACAACGTGCCTCTGTTATCTGTACTTCCTGAC 686760 Query 16607 TAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGC 16662 | ||| | ||| | | ||||| || || |||||||| ||||||||||| || Sbjct 686761 T-AAATCGTTCAACAAGATTTTCATTGACAATTCCATCAGAGGCTGCAAAAAATGC 686815 Score = 86.0 bits (94), Expect = 6e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 ||||| ||||| | |||| | || ||||| || |||||||| ||||| || ||||||| Sbjct 685861 TTTTGGTATTCTCCAACTTTTTTCTCAAAAAAGTTTGTTTTACCTTCCAAAGAAATATGC 685920 Query 16004 TCCATAAAATCAAAAGGATTTT 16025 |||||||||||||| ||||||| Sbjct 685921 TCCATAAAATCAAATGGATTTT 685942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462475773747600