Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19]
6,266 sequences; 272,660,569 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq305 100 3e-16
>seq305
Length=1407860
Score = 100 bits (110), Expect = 3e-16
Identities = 139/195 (71%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 16286 AATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCA 16345
|| ||||| |||||||| ||||||| || || | ||| || || || ||||| ||||
Sbjct 686354 AACGTAAGTCCTGGCATAAGTCCTCTCTTCTTTAACCAGAAAATGGCAGCAAAGCTACCA 686413
Query 16346 GAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAttt 16405
||||| |||||||| |||||||||||||| || | || ||| | | || ||
Sbjct 686414 CTGAAGAAAATACCTTCTACTGCGGCAAATGCGACTACACGTTCAGGGAAAGTAGCGGTT 686473
Query 16406 ttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCT 16465
| | | |||||| || |||||||| ||||||| | ||||||| | || ||
Sbjct 686474 TCATGGTTTATCCAATTCAATGCCCAATTAGCTTTTTTTGCAACACAGGGTAAATTTTCA 686533
Query 16466 ATTGCATTAAATAAA 16480
|| ||||||||||||
Sbjct 686534 ATGGCATTAAATAAA 686548
Score = 95.1 bits (104), Expect = 1e-14
Identities = 128/176 (73%), Gaps = 2/176 (1%)
Strand=Plus/Plus
Query 16488 TTTCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547
|||||||| |||| ||| || ||||| |||| ||| |||||||||||||| | ||
Sbjct 686641 TTTCTTTGGCATCTGCAATGTACGTATCAATTAATAATGAGTACATTTCTGAATGCACAT 686700
Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTT-CAGAG 16606
| ||||| |||| || || ||||| || || | || || | ||| ||||||| | ||
Sbjct 686701 TTTCCATAGCTACTTGGAAGCCATAGAAACAACGTGCCTCTGTTATCTGTACTTCCTGAC 686760
Query 16607 TAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGC 16662
| ||| | ||| | | ||||| || || |||||||| ||||||||||| ||
Sbjct 686761 T-AAATCGTTCAACAAGATTTTCATTGACAATTCCATCAGAGGCTGCAAAAAATGC 686815
Score = 86.0 bits (94), Expect = 6e-12
Identities = 68/82 (83%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003
||||| ||||| | |||| | || ||||| || |||||||| ||||| || |||||||
Sbjct 685861 TTTTGGTATTCTCCAACTTTTTTCTCAAAAAAGTTTGTTTTACCTTCCAAAGAAATATGC 685920
Query 16004 TCCATAAAATCAAAAGGATTTT 16025
|||||||||||||| |||||||
Sbjct 685921 TCCATAAAATCAAATGGATTTT 685942
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462475773747600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |