Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19]
6,266 sequences; 272,660,569 total letters
Query= NC_002686.2
Length=124784
Score E
Sequences producing significant alignments: (Bits) Value
seq202 118 8e-22
>seq202
Length=497029
Score = 118 bits (130), Expect = 8e-22
Identities = 182/260 (70%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 20044 TTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATGG 20103
||||| ||||||||||| |||| || ||||||| || || || ||||| || ||||||
Sbjct 850 TTTCCATTATTAACTACAAAACAAGTGTTTTGGAGGGGAGTAGTAGAAGAATTGTTATGG 909
Query 20104 TTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGAGC 20163
||||| |||||||| |||||| | | ||| | ||| || ||| | ||||||
Sbjct 910 TTTATAAAAGGATCCACAAATGCAAAAGAGTTATCAGAGAAGAATGTTCATATTTGGGAT 969
Query 20164 GCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAAGAGGGGGAT 20223
||| || | || || || | ||||||| || | |||| || |||
Sbjct 970 GCAAATAGTTCGCGTACATACCTAGATTCTTGTGGATTTACTGACAGAGAAGAAGGAGAT 1029
Query 20224 TTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGAAC 20283
|||| ||||| |||||||||||||||||||||| |||||| || || ||||| |
Sbjct 1030 CTGGGACCTGTATATGGATTTCAATGGAGACATTATGGAGCAGAGTACAAGAACATGCAT 1089
Query 20284 ACAAATTATTTTGGACAAGG 20303
|| |||||| || |||||
Sbjct 1090 ACTAATTATAAAGGGCAAGG 1109
Score = 86.0 bits (94), Expect = 5e-12
Identities = 152/219 (69%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 20347 CCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAATGGCT 20406
|| || || || ||||| || | | || |||||| | ||| | || |||||||
Sbjct 1243 CCTAATGATAGGAGAATAATAATGTCAGCATGGAACCCAGTTGATATACCAAAAATGGCT 1302
Query 20407 TTGCCTCCATGTCATATGCTATG-CCAATTTTACGTTGCTAATAATGAATTGTCGTGTCA 20465
|| |||||||||||| || | || || ||||| || |||| ||||| ||||| ||
Sbjct 1303 TTACCTCCATGTCAT-TGTTTTGTACAGTTTTATGTAAGTAATGGAGAATTATCGTGCCA 1361
Query 20466 AATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGC 20525
|||||||| || ||| || ||||| || || || || || || || ||| ||| |
Sbjct 1362 GTTGTATCAAAGAAGCGCCGACATGGGTCTTGGAGTACCATTTAACATAGCATCGTATTC 1421
Query 20526 GCTGCTTACGTATATGATTGCACATGTTACAGATTTAAA 20564
||| | || || ||| | || || |||||| || ||||
Sbjct 1422 ACTGTTAACTTACATGTTAGCTCACGTTACAAATCTAAA 1460
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399153515565370
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |