Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq202 118 8e-22 >seq202 Length=497029 Score = 118 bits (130), Expect = 8e-22 Identities = 182/260 (70%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 20044 TTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATGG 20103 ||||| ||||||||||| |||| || ||||||| || || || ||||| || |||||| Sbjct 850 TTTCCATTATTAACTACAAAACAAGTGTTTTGGAGGGGAGTAGTAGAAGAATTGTTATGG 909 Query 20104 TTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGAGC 20163 ||||| |||||||| |||||| | | ||| | ||| || ||| | |||||| Sbjct 910 TTTATAAAAGGATCCACAAATGCAAAAGAGTTATCAGAGAAGAATGTTCATATTTGGGAT 969 Query 20164 GCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAAGAGGGGGAT 20223 ||| || | || || || | ||||||| || | |||| || ||| Sbjct 970 GCAAATAGTTCGCGTACATACCTAGATTCTTGTGGATTTACTGACAGAGAAGAAGGAGAT 1029 Query 20224 TTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGAAC 20283 |||| ||||| |||||||||||||||||||||| |||||| || || ||||| | Sbjct 1030 CTGGGACCTGTATATGGATTTCAATGGAGACATTATGGAGCAGAGTACAAGAACATGCAT 1089 Query 20284 ACAAATTATTTTGGACAAGG 20303 || |||||| || ||||| Sbjct 1090 ACTAATTATAAAGGGCAAGG 1109 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 20347 CCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAATGGCT 20406 || || || || ||||| || | | || |||||| | ||| | || ||||||| Sbjct 1243 CCTAATGATAGGAGAATAATAATGTCAGCATGGAACCCAGTTGATATACCAAAAATGGCT 1302 Query 20407 TTGCCTCCATGTCATATGCTATG-CCAATTTTACGTTGCTAATAATGAATTGTCGTGTCA 20465 || |||||||||||| || | || || ||||| || |||| ||||| ||||| || Sbjct 1303 TTACCTCCATGTCAT-TGTTTTGTACAGTTTTATGTAAGTAATGGAGAATTATCGTGCCA 1361 Query 20466 AATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGC 20525 |||||||| || ||| || ||||| || || || || || || || ||| ||| | Sbjct 1362 GTTGTATCAAAGAAGCGCCGACATGGGTCTTGGAGTACCATTTAACATAGCATCGTATTC 1421 Query 20526 GCTGCTTACGTATATGATTGCACATGTTACAGATTTAAA 20564 ||| | || || ||| | || || |||||| || |||| Sbjct 1422 ACTGTTAACTTACATGTTAGCTCACGTTACAAATCTAAA 1460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399153515565370