Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq305 109 5e-19 >seq305 Length=1407860 Score = 109 bits (120), Expect = 5e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 14006 ACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGAC 14065 || || | |||||||| || | || | ||| || || | || || ||||||||| || Sbjct 686025 ACCTTCTGACAACCTAACTCCACGAGCAGTCTGTCTGCGACAAATTCGATATATTGACAC 686084 Query 14066 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTT 14125 || | | ||||||||| ||||| | || ||||| | | || ||||||||||||| | Sbjct 686085 ATAAGTTTACAATTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAATTCTTGT 686144 Query 14126 TCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTT 14185 || || |||||| || || ||||| ||||| ||| ||| || | | | Sbjct 686145 TCAATTTCCACAGCATCTTTAATAATTGACGTAACTCGCTCAGAAGACGGCTTTTGTATA 686204 Query 14186 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 14228 | ||||||||| |||||||| |||||||||||||| | |||| Sbjct 686205 ATATGTTTAAACATTAAACATGCAAAATCACAATGTAATCCCT 686247 Score = 105 bits (116), Expect = 6e-18 Identities = 136/184 (74%), Gaps = 3/184 (2%) Strand=Plus/Plus Query 14454 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14513 |||| ||||| | | || |||||| |||||||| | ||| |||||||| || || | Sbjct 686639 CCTT-TCTTTGGCATCTGCAATGTACGTATCAATTAATAATGAGTACATTTCTGAATGCA 686697 Query 14514 TGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCT-CT 14572 ||||||||||||| || || ||||| ||||| | || |||| ||||| | || Sbjct 686698 CATTTTCCATAGCTACTTGGAAGCCATAGAAACAACGTGCCTCTGTTATCTGTACTTCCT 686757 Query 14573 GAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCC 14632 || | ||||| ||| | | ||||||||| || || |||||| |||||||||||||| Sbjct 686758 GACT-AAATCGTTCAACAAGATTTTCATTGACAATTCCATCAGAGGCTGCAAAAAATGCT 686816 Query 14633 AATA 14636 |||| Sbjct 686817 AATA 686820 Score = 100 bits (110), Expect = 3e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 13913 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13972 ||||| ||||| | |||| |||| ||||| ||||| ||||||||||||| || |||| Sbjct 685861 TTTTGGTATTCTCCAACTTTTTTCTCAAAAAAGTTTGTTTTACCTTCCAAAGAAATATGC 685920 Query 13973 TCCATAAAATCAAATGGATTTGTTGACATAAACAC 14007 ||||||||||||||||||||| |||||| |||| Sbjct 685921 TCCATAAAATCAAATGGATTTTCGGACATATACAC 685955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482307820280880