Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19]
6,266 sequences; 272,660,569 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq305 109 5e-19
>seq305
Length=1407860
Score = 109 bits (120), Expect = 5e-19
Identities = 158/223 (71%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 14006 ACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGAC 14065
|| || | |||||||| || | || | ||| || || | || || ||||||||| ||
Sbjct 686025 ACCTTCTGACAACCTAACTCCACGAGCAGTCTGTCTGCGACAAATTCGATATATTGACAC 686084
Query 14066 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTT 14125
|| | | ||||||||| ||||| | || ||||| | | || ||||||||||||| |
Sbjct 686085 ATAAGTTTACAATTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAATTCTTGT 686144
Query 14126 TCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTT 14185
|| || |||||| || || ||||| ||||| ||| ||| || | | |
Sbjct 686145 TCAATTTCCACAGCATCTTTAATAATTGACGTAACTCGCTCAGAAGACGGCTTTTGTATA 686204
Query 14186 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 14228
| ||||||||| |||||||| |||||||||||||| | ||||
Sbjct 686205 ATATGTTTAAACATTAAACATGCAAAATCACAATGTAATCCCT 686247
Score = 105 bits (116), Expect = 6e-18
Identities = 136/184 (74%), Gaps = 3/184 (2%)
Strand=Plus/Plus
Query 14454 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14513
|||| ||||| | | || |||||| |||||||| | ||| |||||||| || || |
Sbjct 686639 CCTT-TCTTTGGCATCTGCAATGTACGTATCAATTAATAATGAGTACATTTCTGAATGCA 686697
Query 14514 TGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCT-CT 14572
||||||||||||| || || ||||| ||||| | || |||| ||||| | ||
Sbjct 686698 CATTTTCCATAGCTACTTGGAAGCCATAGAAACAACGTGCCTCTGTTATCTGTACTTCCT 686757
Query 14573 GAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCC 14632
|| | ||||| ||| | | ||||||||| || || |||||| ||||||||||||||
Sbjct 686758 GACT-AAATCGTTCAACAAGATTTTCATTGACAATTCCATCAGAGGCTGCAAAAAATGCT 686816
Query 14633 AATA 14636
||||
Sbjct 686817 AATA 686820
Score = 100 bits (110), Expect = 3e-16
Identities = 79/95 (83%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 13913 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13972
||||| ||||| | |||| |||| ||||| ||||| ||||||||||||| || ||||
Sbjct 685861 TTTTGGTATTCTCCAACTTTTTTCTCAAAAAAGTTTGTTTTACCTTCCAAAGAAATATGC 685920
Query 13973 TCCATAAAATCAAATGGATTTGTTGACATAAACAC 14007
||||||||||||||||||||| |||||| ||||
Sbjct 685921 TCCATAAAATCAAATGGATTTTCGGACATATACAC 685955
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482307820280880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |