Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq202 100 4e-16 >seq202 Length=497029 Score = 100 bits (110), Expect = 4e-16 Identities = 150/215 (70%), Gaps = 15/215 (7%) Strand=Plus/Plus Query 104530 GATAGAAGAATGATATTATTAGCTTGGAACCCAAAGGATAATTCTAAAATGGCACTTCCT 104589 ||||| ||||| ||| | | ||| ||||||||| |||| | |||||||| | ||| Sbjct 1249 GATAGGAGAATAATAATGTCAGCATGGAACCCAGTTGATATACCAAAAATGGCTTTACCT 1308 Query 104590 CCTTGTCATTGTATAGCACATTTTGATGTAAGTTCAAAAATAAATGGTAAAAGAGAATTG 104649 || ||||||||| | | ||| ||| |||||||| ||||| |||||| Sbjct 1309 CCATGTCATTGTTTTGTACAGTTTTATGTAAGT---------AATGG------AGAATTA 1353 Query 104650 TCTTGTCATTTATTTCAAAGATCTGCAGATATGGGGTTGGGAGTTCCTTTTAACATAGCA 104709 || || || || | ||||||| || || ||||| | ||||| || |||||||||||| Sbjct 1354 TCGTGCCAGTTGTATCAAAGAAGCGCCGACATGGGTCTTGGAGTACCATTTAACATAGCA 1413 Query 104710 AGTTATGCATTATTAACACATATAATAGCTCATGT 104744 ||| || | ||||| | || ||||||| || Sbjct 1414 TCGTATTCACTGTTAACTTACATGTTAGCTCACGT 1448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679761153537120