Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq467 114 1e-20 seq307 107 1e-18 >seq467 Length=2555529 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || || | |||||| || ||||| |||||||| |||||||| | Sbjct 1366115 TCCACCACGGAGACGGAGCACAAGGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCAGA 1366174 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | |||||||||||||||||| || |||| ||||||||||| || || Sbjct 1366175 TAATGTGCGTCCATCTTCCAATTGTTTGCCAGCGAAGATCAGTCTTTGTTGGTCTGGAGG 1366234 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | || || ||||| ||||| | || || || | | ||| |||||| || || Sbjct 1366235 AATACCCTCTTTATCCTGAATTT-TAGCTTTAACATTTTCAATAGTGTCTGAGGCTTCAA 1366293 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||||| |||||| | || || |||||||| ||||| || || |||||| Sbjct 1366294 CTTCAAGAGTGATGGTCTTTCCAGTCAATGTCTTTACGAAGATCTGCATT 1366343 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| |||| |||||| | || || || |||||||| ||||| ||||| || | Sbjct 1364158 TCCTCCCCTGAGTCGAAGTACTAAATGGAGAGTAGATTCTTTCTGAATATTGTAATCAGA 1364217 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| || |||||||| |||||| || || |||| | ||| || ||||| || Sbjct 1364218 AAGTGTACGACCATCTTCCAGTTGTTTACCAGCGAAGATTAATCTCTGCTGATCTGGTGG 1364277 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||| || || ||||| | ||| || | | ||| ||||||| | ||| Sbjct 1364278 AATGCCTTCTTTGTCTTGAATTTTTGCCTTCACGTTTTCAATAGTGTCAGACGCCTCAAC 1364337 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | || ||| |||| || || | || || ||||||||||||||| Sbjct 1364338 TTCCAGAGTTATGGTTTTTCCAGTAAGAGTCTTCACAAAAATTTGCATT 1364386 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | ||||| | ||||| ||||||||||||||||| ||||| |||| Sbjct 1365887 TCCACCACGGAGACGGAGTACAAGATGAAGGGTTGATTCTTTTTGAATATTGTAATCGGA 1365946 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | |||||| |||||||| || ||| |||| | |||||||||||| || Sbjct 1365947 TAACGTGCGTCCATCTTCTAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCTGGAGG 1366006 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||||| || || ||||| | || || || | | ||| || || | || Sbjct 1366007 AATACCTTCTTTGTCCTGAATTT-TGGCTTTAACATTTTCAATTGTATCTGATGCTTCCA 1366065 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | |||||| | || || |||||||| ||||| || || |||||| Sbjct 1366066 CTTCGAGAGTGATGGTCTTTCCAGTCAATGTCTTTACGAAGATCTGCATT 1366115 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||| | ||||| ||||||||||||||||| ||||| |||| | || | |||| Sbjct 1364630 AGTACAAGATGAAGGGTTGATTCTTTTTGAATATTGTAATCGGATAACGTGCGTCCATCT 1364689 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || |||||||| || ||| |||| | |||||||||||| || | ||||| || || Sbjct 1364690 TCTAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCC 1364749 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||||| ||| || | ||| |||||| | ||| ||| | ||| || || Sbjct 1364750 TGAATTTTAGCCTTTACATTCTCAATGGTGTCAGATGCCTCAACTTCCAAGGTTATAGTT 1364809 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || || || | ||||| || || || |||||| Sbjct 1364810 TTTCCAGTAAGGGTTTTCACGAATATCTGCATT 1364842 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||| | ||||| ||||||||||||||||| ||||| |||| | || | |||| Sbjct 1364977 AGTACAAGATGAAGGGTTGATTCTTTTTGAATATTGTAATCGGATAACGTGCGTCCATCT 1365036 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATC 18211 || |||||||| || ||| |||| | |||||||||||| Sbjct 1365037 TCTAATTGTTTACCAGCAAAGATCAATCTTTGTTGATC 1365074 >seq307 Length=2169461 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || ||||| | |||| |||||||| |||||||||||||||||||| || | Sbjct 1515443 TCCTCCTCGAAGTCTCAAAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCAGA 1515384 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | |||||| | |||||| || ||| |||| | || ||| |||| ||| Sbjct 1515383 GAGTGTCCTTCCATCTTCAAGTTGTTTCCCAGCAAAGATTAATCGTTGCTGATGAGGGGG 1515324 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || || || || || | | ||| || | | ||| |||||| | ||| Sbjct 1515323 AATTCCCTCTTTGTCCTGGATCTTTGCCTTTACATTTTCAATTGTGTCAGAAGCTTCGAC 1515264 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | |||||| |||| || || | ||| || ||||| ||||||||| Sbjct 1515263 TTCCAGAGTGATGGTTTTCCCTGTGAGTGTCTTGACAAAGATTTGCATT 1515215 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || ||||| || || | |||||||||||||||||||||||| || || || | Sbjct 1514752 TCCTCCTCGAAGTCTCAGCACAAGGTGAAGTGTTGATTCTTTTTGAATATTATAATCTGA 1514693 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | |||||||| || || || ||| |||| | || ||| ||||| || Sbjct 1514692 AAGTGTCCTTCCATCTTCCAGCTGCTTTCCAGCAAAGATTAATCGTTGCTGATCAGGAGG 1514633 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||||| ||||| || | | || ||||| | | | || || | ||| Sbjct 1514632 AATTCCTTCTTTATCTTGGATCT-TAGCTTTGACATTCTCTATCGTATCTGAAGCTTCGA 1514574 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | ||||||| |||| || || | ||| || ||||| ||||||||| Sbjct 1514573 CTTCCAGGGTGATGGTTTTCCCTGTGAGTGTCTTGACAAAGATTTGCATT 1514524 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||||||||| ||||| || |||| |||||||| |||||||||||||||||||| || | Sbjct 1515899 TCCTCCCCGAAGTCTCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCAGA 1515840 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | |||||| | || || || ||| |||| | || ||| ||||| || Sbjct 1515839 GAGTGTCCTCCCATCTTCGAGCTGCTTTCCTGCAAAGATTAATCGTTGCTGATCTGGAGG 1515780 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | || || || || || | | || ||||| | | | |||||| | ||| Sbjct 1515779 TATTCCCTCTTTGTCCTGGATCT-TAGCTTTGACATTCTCTATTGTGTCAGAAGCTTCGA 1515721 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | ||||||| |||| || || | || || || || ||||||||| Sbjct 1515720 CTTCCAGGGTGATGGTTTTTCCTGTGAGAGTCTTGACGAAGATTTGCATT 1515671 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || ||||| || |||| |||||||| ||||||||||||||||| || || | Sbjct 1510090 TCCTCCTCGAAGTCTTAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTATAATCTGA 1510031 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || ||| | | |||||| | || || || ||| |||| | || ||| || || || Sbjct 1510030 CAGTGTCCTTCCATCTTCGAGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAGG 1509971 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || || || || || | ||| || | | ||| |||||| | ||| Sbjct 1509970 GATTCCCTCTTTGTCCTGGATCTTCGCCTTTACATTTTCAATTGTGTCAGAAGCTTCGAC 1509911 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | |||||| |||| || || | ||| || || || ||||||||| Sbjct 1509910 TTCCAGAGTGATGGTTTTCCCTGTGAGTGTCTTCACGAAGATTTGCATT 1509862 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || ||||| || |||| |||||||| ||||||||||||||||| || || | Sbjct 1510318 TCCTCCTCGAAGTCTTAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTATAATCTGA 1510259 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || ||| | | |||||| | || || || ||| |||| | || ||| || || || Sbjct 1510258 CAGTGTCCTTCCATCTTCGAGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAGG 1510199 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || || || || || | ||| || | | ||| |||||| | ||| Sbjct 1510198 GATTCCCTCTTTGTCCTGGATCTTCGCCTTTACATTTTCAATTGTGTCAGAAGCTTCGAC 1510139 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | ||||||| |||| || || | || || || || ||||||||| Sbjct 1510138 TTCCAGGGTGATGGTTTTTCCTGTGAGAGTCTTGACGAAGATTTGCATT 1510090 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || ||||| || |||| |||||||| ||||||||||||||||| || || | Sbjct 1510546 TCCTCCTCGAAGTCTTAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTATAATCTGA 1510487 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || ||| | | |||||| | || || || ||| |||| | || ||| || || || Sbjct 1510486 CAGTGTCCTTCCATCTTCGAGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAGG 1510427 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || || || || || | ||| || | | ||| |||||| | ||| Sbjct 1510426 GATTCCCTCTTTGTCCTGGATCTTCGCCTTTACATTTTCAATTGTGTCAGAAGCTTCGAC 1510367 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | ||||||| |||| || || | || || || || ||||||||| Sbjct 1510366 TTCCAGGGTGATGGTTTTTCCTGTGAGAGTCTTGACGAAGATTTGCATT 1510318 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || ||||| || |||| |||||||| ||||||||||||||||| || || | Sbjct 1514980 TCCTCCTCGAAGTCTTAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTATAATCTGA 1514921 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || ||| | | |||||| | || || || ||| |||| | || ||| || || || Sbjct 1514920 CAGTGTCCTTCCATCTTCGAGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAGG 1514861 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || || || || || | ||| || | | ||| |||||| | ||| Sbjct 1514860 GATTCCCTCTTTGTCCTGGATCTTCGCCTTTACATTTTCAATTGTGTCAGAAGCTTCGAC 1514801 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | ||||||| |||| || || | || || || || ||||||||| Sbjct 1514800 TTCCAGGGTGATGGTTTTTCCTGTGAGAGTCTTGACGAAGATTTGCATT 1514752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379315030684170