Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq105 140 4e-28 seq305 116 5e-21 >seq105 Length=615523 Score = 140 bits (154), Expect = 4e-28 Identities = 194/272 (71%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 62295 TGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTC 62354 |||||||| ||| | | | ||||| ||| || || | || | ||| | | ||| Sbjct 157521 TGAATGGAACCATTGTTTGCTATAATTTCATTTTTCATATTTTCGTCCCAAAGATCTCTT 157462 Query 62355 TCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTC 62414 || |||||| ||| | | ||| || || |||| || |||||||| ||||| |||| Sbjct 157461 TCAGTTAAATCTCGTAATAAATGAGGATTCACTATCTGAAATTCTCCTGACAAAACTCGT 157402 Query 62415 CGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCA 62474 || || ||||| ||||| || || ||||| | || |||||||||||||||||||| || Sbjct 157401 CGTGTATAAATGTTACTAGTGTAAGGTTCTATAGATTCATTATTTCCCAAAATTTGCGCG 157342 Query 62475 GTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATT 62534 || ||||| || ||||| || || | ||| ||| |||||| | |||| | || ||| Sbjct 157341 GTAGATGCTGTTGGCATTGGAGCTATCAACAAAGAATTTCTGACTCCGTGTTTTGCAATT 157282 Query 62535 TTATCTTTTAGATGTTCCCAATTCCAAAGATC 62566 || |||||||| | |||| | ||| | ||| Sbjct 157281 TTTTCTTTTAGCGCTGCCCAGTCCCATAAATC 157250 Score = 116 bits (128), Expect = 5e-21 Identities = 123/162 (76%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 63177 GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGA 63236 ||||| || |||||| || || |||||||||| | |||| |||| |||||| ||| Sbjct 156391 GTATATAAAGTTTCGAATTCATCACCCCAAACATCAGCTAATCCAGGAGATTCATGTGGA 156332 Query 63237 CACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAA 63296 |||||||| | ||| | || | ||| |||||||||||||| |||||||||||||| Sbjct 156331 CACATCAAAGTCCAAACACCATTTTCCAAAACTCGTTTCATAAAAAGATCAGGAATCCAC 156272 Query 63297 AGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCT 63338 | ||| ||||| ||||||| ||||| ||| || || ||| Sbjct 156271 AAAGCATAAAATAATTCTCTTGCTCTATTTTCTTCTTTACCT 156230 Score = 114 bits (126), Expect = 2e-20 Identities = 217/313 (69%), Gaps = 10/313 (3%) Strand=Plus/Minus Query 63336 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63395 || ||||| ||||| ||||| | || | | |||||| | |||||| ||||| | ||| Sbjct 156169 CCAGTATTTTTTTTGAGATCCAAAAATTCAAAAATATCTGCATGCCATGGTTCTAGATAT 156110 Query 63396 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63455 | || | ||||||||||||| |||||||||||||| | |||||||| |||||||| Sbjct 156109 ACAGCAAATGCTCCAGGCCGTTTATTTCCTCCCTGATCAACATATCTAGCTGTGTTATTG 156050 Query 63456 TAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCT 63515 || || || | ||| || | | || || |||| |||| ||||| | || | | | Sbjct 156049 TACACCCTAAGCATCGGTACTAAGCCATTAGATACACCAAGTGTACCAGCTAT-TGGTGT 155991 Query 63516 -CCACTGGCACGAAT---AT-TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 63570 || || || || || || ||| ||| ||| || || || || || ||| | Sbjct 155990 ACCTCTAGCTCGTATGCAATGTAC--ATT--TAGTCCAATACCACCAGCTGATTTGCTAA 155935 Query 63571 TTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAA 63630 | ||||| || | || || || ||||| || ||||| |||||||| || |||| || Sbjct 155934 TCAATGCACACCTCTTCAATGTATCATAAATTCCTTCAATGCTATCTTCAGTCATTGAAA 155875 Query 63631 GTAGAAAACAGCT 63643 | || ||||| || Sbjct 155874 GAAGGAAACAACT 155862 >seq305 Length=1407860 Score = 116 bits (128), Expect = 5e-21 Identities = 118/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 33873 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33932 |||||||| ||||| | ||||| || || | || || || |||||||| | ||||| Sbjct 686682 TACATTTCTGAATGCACATTTTCCATAGCTACTTGGAAGCCATAGAAACAACGTGCCTCT 686741 Query 33933 GTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTG 33992 || ||||| ||||| || ||||||||| | | ||||||||| || ||||||||| | Sbjct 686742 GTTATCTGTACTTCCTGACTAAATCGTTCAACAAGATTTTCATTGACAATTCCATCAGAG 686801 Query 33993 GCTGCAAAAAACGCCAATACATGTTTTATAAAAT 34026 ||||||||||| || |||||||| ||| |||| Sbjct 686802 GCTGCAAAAAATGCTAATACATGAGATATGAAAT 686835 Score = 86.0 bits (94), Expect = 8e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 33410 CAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAG 33469 || ||| |||||||| ||||| |||||| ||| | || ||||||||| ||||| | Sbjct 686051 CAGTCTGTCTGCGACAAATTCGATATATTGACACATAAGTTTACAATTCATGCCTATCAT 686110 Query 33470 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAAT 33529 || ||| || | || | || | ||||||||||||||| || |||| | | ||||| Sbjct 686111 TTCAACAGGTAATGCATCTGTTAAAAATTCTTGTTCAATTTCCACAGCATCTTTAATAAT 686170 Query 33530 AAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAA 33589 | |||| || | ||| |||| | |||||||||||| |||||||| || Sbjct 686171 TGACGTAACTCGCTCAGAAGACGGCTTTTGTATAATATGTTTAAACATTAAACATGCAAA 686230 Query 33590 ATCGCAGTGCAGACCCT 33606 ||| || || | |||| Sbjct 686231 ATCACAATGTAATCCCT 686247 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/118 (76%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 34058 ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 34117 ||| ||| ||| ||| | ||| ||||| ||||| ||||| || || || || || ||||| Sbjct 686947 ATTTATACCTT-AGAAAGATCAACTTCCTCCACAGTCCAGAAGGAAGCTTCCGCTTTTTT 687005 Query 34118 ATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 |||||| | ||| || ||| | |||| || || || | |||||||||| ||||||| Sbjct 687006 ATACATTTGCCAAATATCAGGCCATTGAATAGGAAAGACAACAAATCTACGTGGATTT 687063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629768269536480