Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq105 145 7e-30 seq305 138 1e-27 >seq105 Length=615523 Score = 145 bits (160), Expect = 7e-30 Identities = 220/311 (71%), Gaps = 4/311 (1%) Strand=Plus/Minus Query 37044 TTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTTCT 37103 |||||| |||||||| | | | |||| ||| || || | | | ||| | || ||| Sbjct 157522 TTGAATGGAACCATTGTTTGCTATAATTTCATTTTTCATATTTTCGTCCCAAAGATCTCT 157463 Query 37104 ACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCT 37163 ||| |||| |||| || ||||| || | |||||| ||||| || || |||| Sbjct 157462 TTCAGTTAAATCTCGTAATAAATGAGGATTCACTATCTGAAATTCTCCTGACAAAACTCG 157403 Query 37164 TCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGA 37223 || |||||| || || ||||| || ||||| || || |||||||| | || ||||| | Sbjct 157402 TCGTGTATAAATGTTACTAGTGTAAGGTTCTATAGATTCATTATTTCCCAAAATTTGCGC 157343 Query 37224 TGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAAT 37283 |||||||| || |||||||| ||||| | | |||||| | ||| ||| | ||| Sbjct 157342 GGTAGATGCTGTTGGCATTGGAGCTATCAACAAAGAATTTCTGACTCCGTGTTTTGCAAT 157283 Query 37284 TCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTT--CTTTAACCACATATCA 37341 | | | |||||| | ||| ||||||||||| ||||| | | || |||||||||| Sbjct 157282 TTTTTCTTTTAGCGCTGCCCAGTCCCATAAATCAGTTGGTGTAACGTT--CCACATATCA 157225 Query 37342 TATTGTAGAAT 37352 ||||||| ||| Sbjct 157224 TATTGTAAAAT 157214 Score = 122 bits (134), Expect = 8e-23 Identities = 204/290 (70%), Gaps = 10/290 (3%) Strand=Plus/Minus Query 38109 AAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTT 38168 ||| || || ||||| || ||||||||||||| ||| | | | |||||| || | ||| Sbjct 156146 AAATTCAAAAATATCTGCATGCCATGGTTCTAGATATACAGCAAATGCTCCAGGCCGTTT 156087 Query 38169 ATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTAT 38228 || |||||||||| || ||||||| |||||||||| || | || | ||| ||||||| Sbjct 156086 ATTTCCTCCCTGATCAACATATCTAGCTGTGTTATTGTACACCCTAAGCATCGGTACTAA 156027 Query 38229 ACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTAT---AT-TAC 38284 ||||||||| || | |||| | ||| ||||| |||||||||| || ||| Sbjct 156026 GCCATTAGATACACCAAGTGTACCAGCTATTGGTGTACCTCTAGCTCGTATGCAATGTAC 155967 Query 38285 TTATCGACAATCCTATTCCACCTGCATGTTTTGAT-ATTAAAGCGCATTGTTTTAACGTA 38343 | | | ||| || ||||| || || |||| | || || || || || || ||| Sbjct 155966 ATTT----AGTCCAATACCACCAGC-TGATTTGCTAATCAATGCACACCTCTTCAATGTA 155912 Query 38344 TCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACT 38393 ||| | || ||||| || || || || | |||| || | |||||||| Sbjct 155911 TCATAAATTCCTTCAATGCTATCTTCAGTCATTGAAAGAAGGAAACAACT 155862 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 38424 AAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTAT 38483 ||| |||||||||||||||||| | || || ||| |||||| |||| || |||||||| Sbjct 155763 AAACAATGTAGGAGATGCATGTGTAAAATATCGTTCTGACAAAAAATTGTAAGTTTCTAT 155704 Query 38484 TACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGG 38543 | | || ||||| | || |||||| | | | || ||||| | |||||||||||| Sbjct 155703 GGCTTTTTCAATATCTTCACCATGAATAGCAACTGCGACTCTCATCAACATATGTTGTGG 155644 Query 38544 TCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCC 38603 ||||| | | ||| || ||| || ||||| | |||| | ||||| | || Sbjct 155643 CCTTTCAACAACTTTTCCATGTATTTTTAGCAGATAGCTTCTTTCAAGCGTTTTAAAGCC 155584 Query 38604 AAAATAACTATATGAATAATCTCTATCGTA 38633 ||||||| | || | |||||||||| || Sbjct 155583 AAAATAATTGTAACTAAAATCTCTATCATA 155554 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 37674 ATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTT 37733 ||| ||||| || | | | ||| || | | ||| ||||||||||||||||| || | Sbjct 156722 ATTCACAAACATATTAACGGCAATTGAAGCCAAATTGCATACAGCAACTTCATCCGCGCT 156663 Query 37734 ACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTG 37793 | | || | || |||||||| | |||||| |||||||||| | || || Sbjct 156662 GGAATACTGAACAACTTCTGTACATAAATTACTACTCTTAATTGTTCCTATGTTTTGCTG 156603 Query 37794 ATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTG 37853 ||| || ||| ||| || |||||| || || |||||||| |||||| |||| ||| Sbjct 156602 ATTTGACTTTCGATTGCAGTGATCTTTGTAAAGCATATACGGGGTTCCTGTCTCTACTTG 156543 Query 37854 AGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAA 37891 ||| | |||| | |||||||| ||| |||| || Sbjct 156542 AGCTATAAGGATAGCTGTCCATAAATCTCTAGCTTGAA 156505 >seq305 Length=1407860 Score = 138 bits (152), Expect = 1e-27 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959 || ||||| |||||||| |||||||||||||| | |||||||||||||| ||| || Sbjct 686661 TACGTATCAATTAATAATGAGTACATTTCTGAATGCACATTTTCCATAGCTACTTGGAAG 686720 Query 11960 CCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTC 12019 ||||||||||| |||||||||| |||||| ||| | ||||| ||| | | ||| Sbjct 686721 CCATAGAAACAACGTGCCTCTGTTATCTGTACTTCCTGACTAAATCGTTCAACAAGATTT 686780 Query 12020 TCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATG 12063 ||||| ||||| |||||| | |||||||||||||| || ||| Sbjct 686781 TCATTGACAATTCCATCAGAGGCTGCAAAAAATGCTAATACATG 686824 Score = 122 bits (134), Expect = 8e-23 Identities = 162/224 (72%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 11432 ACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGAC 11491 || || | |||||||||||| | | ||| |||||||| ||||| ||||| ||| || Sbjct 686025 ACCTTCTGACAACCTAACTCCACGAGCAGTCTGTCTGCGACAAATTCGATATATTGACAC 686084 Query 11492 ATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTT 11551 || | ||||||||| ||||| | || || || | ||| |||| ||||| || | | Sbjct 686085 ATAAGTTTACAATTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAATTCTTGT 686144 Query 11552 TCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGG---ATGT 11608 || || | || ||||| | || || |||| ||||| || ||| | || ||| Sbjct 686145 TCAATTTCCACAGCATCTTTAATAATTGACG---TAACTCGCTCAGAAGACGGCTTTTGT 686201 Query 11609 AATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACC 11652 | | |||||||||||||||||| ||||||||||||||||| || Sbjct 686202 ATAATATGTTTAAACATTAAACATGCAAAATCACAATGTAATCC 686245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468488102795040