Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19]
6,266 sequences; 272,660,569 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq105 161 1e-34
seq305 122 1e-22
>seq105
Length=615523
Score = 161 bits (178), Expect = 1e-34
Identities = 199/272 (73%), Gaps = 0/272 (0%)
Strand=Plus/Minus
Query 65088 TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTC 65147
|||||||| ||| | ||| ||||| ||| || || | || | ||| | | |||
Sbjct 157521 TGAATGGAACCATTGTTTGCTATAATTTCATTTTTCATATTTTCGTCCCAAAGATCTCTT 157462
Query 65148 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 65207
|| |||||| ||| | | ||| ||||| |||| ||||||||||| ||||| ||||
Sbjct 157461 TCAGTTAAATCTCGTAATAAATGAGGATTCACTATCTGAAATTCTCCTGACAAAACTCGT 157402
Query 65208 CGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCA 65267
|| || ||||| ||||| || || ||||| | ||| |||||||||||||||||||| ||
Sbjct 157401 CGTGTATAAATGTTACTAGTGTAAGGTTCTATAGATTCATTATTTCCCAAAATTTGCGCG 157342
Query 65268 GTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATT 65327
|| ||||| || ||||| || || | ||| ||| |||||| | |||| | || |||
Sbjct 157341 GTAGATGCTGTTGGCATTGGAGCTATCAACAAAGAATTTCTGACTCCGTGTTTTGCAATT 157282
Query 65328 TTATCTTTTAGAGGTTCCCAATTCCAAAGATC 65359
|| |||||||| | | |||| | ||| | |||
Sbjct 157281 TTTTCTTTTAGCGCTGCCCAGTCCCATAAATC 157250
Score = 122 bits (134), Expect = 1e-22
Identities = 124/162 (77%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 65970 GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA 66029
||||| || |||||| || || |||||||||| | ||||||||| |||||| |||
Sbjct 156391 GTATATAAAGTTTCGAATTCATCACCCCAAACATCAGCTAATCCAGGAGATTCATGTGGA 156332
Query 66030 CACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAA 66089
|||||||| | ||| | || | ||| |||||||||||||| ||||||||||||||
Sbjct 156331 CACATCAAAGTCCAAACACCATTTTCCAAAACTCGTTTCATAAAAAGATCAGGAATCCAC 156272
Query 66090 AGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCT 66131
| ||| |||||| ||||| | ||||| ||| || || |||
Sbjct 156271 AAAGCATAAAATAATTCTCTTGCTCTATTTTCTTCTTTACCT 156230
Score = 104 bits (114), Expect = 3e-17
Identities = 215/314 (68%), Gaps = 12/314 (4%)
Strand=Plus/Minus
Query 66129 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTAT 66188
|| ||||| ||||| ||||| | || | | |||||| |||||| ||||| | |||
Sbjct 156169 CCAGTATTTTTTTTGAGATCCAAAAATTCAAAAATATCTGCATGCCATGGTTCTAGATAT 156110
Query 66189 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 66248
| || | ||||||||||||| |||||||||||||| | |||||||| ||||||||
Sbjct 156109 ACAGCAAATGCTCCAGGCCGTTTATTTCCTCCCTGATCAACATATCTAGCTGTGTTATTG 156050
Query 66249 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAG--C 66306
|| || || | ||| || | | ||||| ||| |||| || || || ||| |
Sbjct 156049 TACACCCTAAGCATCGGTACTAAGCCATTAGATACACCAAGTGTACC--AGCTATTGGTG 155992
Query 66307 TTCCACTTGCACGAAT---AT-TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 66362
| || || || || || || ||| ||| ||| || || || || || |||
Sbjct 155991 TACCTCTAGCTCGTATGCAATGTAC--ATT--TAGTCCAATACCACCAGCTGATTTGCTA 155936
Query 66363 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTA 66422
|| ||||| || | || || |||||||| || || || || ||||| || |||| |
Sbjct 155935 ATCAATGCACACCTCTTCAATGTATCATAAATTCCTTCAATGCTATCTTCAGTCATTGAA 155876
Query 66423 AGTAGAAAACAGCT 66436
|| || ||||| ||
Sbjct 155875 AGAAGGAAACAACT 155862
Score = 96.9 bits (106), Expect = 5e-15
Identities = 227/336 (68%), Gaps = 15/336 (4%)
Strand=Plus/Minus
Query 65581 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 65640
|||| |||||||||||||| ||| || ||| ||||||||||| ||||| ||||| |
Sbjct 156864 TACCTATAGGTCTATGTCTGAAATTTGACTTTTTGGCTTCTGGAATCGGATAGTAATTGA 156805
Query 65641 TATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGA 65697
||| |||| ||||| | ||| | | || ||| |||| ||| | || |||||
Sbjct 156804 CATCAATAACTTTATCCAAATTACAAGTAACGATT--TTTG-TCACCTTTTTAAGTTTTT 156748
Query 65698 GAAAATCAAA----TCGCT-CATCTATT-ACAAACATGTTCAATGCAACAGATGCCAGAT 65751
||||||| || | | | | ||| |||||||| || | |||| || |||| ||
Sbjct 156747 GAAAATCGAACGTTTTGTTAGAGGAATTCACAAACATATTAACGGCAATTGAAGCCAAAT 156688
Query 65752 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 65811
| || || || || |||| || | ||| || | | || || || | ||||||||
Sbjct 156687 TGCATACAGCAACTTCATCCGCGCTGGAATACTGAACAACTTCTGTACATAAATTACTAC 156628
Query 65812 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 65871
||| || ||||||| ||||| ||||| |||| || || ||| || ||||| |
Sbjct 156627 TCTTAATTGTTCCTATGTTTTGCTGATTTGACTTTCGATTGCAGTGATCTTTGTAAAGCA 156568
Query 65872 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAA 65907
| | || || || || || | |||| ||||||
Sbjct 156567 TATACGGGGTTCCTGTCTCTACTTGAG---CTATAA 156535
>seq305
Length=1407860
Score = 122 bits (134), Expect = 1e-22
Identities = 132/175 (75%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 36428 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 36487
|| |||||||| || | |||||||| ||||| | ||||| || || | ||| ||
Sbjct 686661 TACGTATCAATTAATAATGAGTACATTTCTGAATGCACATTTTCCATAGCTACTTGGAAG 686720
Query 36488 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTT 36547
|| |||||||| | ||||| || ||||||||||| || ||||||||| | | ||||
Sbjct 686721 CCATAGAAACAACGTGCCTCTGTTATCTGTACTTCCTGACTAAATCGTTCAACAAGATTT 686780
Query 36548 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT 36602
||||| || ||||| ||| |||||||||||| || |||||||| ||| ||||
Sbjct 686781 TCATTGACAATTCCATCAGAGGCTGCAAAAAATGCTAATACATGAGATATGAAAT 686835
Score = 93.3 bits (102), Expect = 6e-14
Identities = 141/199 (71%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 35986 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 36045
|| ||| |||||||||||||| |||||| ||| | || ||||||||| ||||| |
Sbjct 686051 CAGTCTGTCTGCGACAAATTCGATATATTGACACATAAGTTTACAATTCATGCCTATCAT 686110
Query 36046 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 36105
|| ||| || | || | || | ||||||||||||||| || || ||| | |||||
Sbjct 686111 TTCAACAGGTAATGCATCTGTTAAAAATTCTTGTTCAATTTCCACAGCATCTTTAATAAT 686170
Query 36106 AGATATTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACATCAAACATGCG 36163
|| | ||| || | ||| | || ||| |||||||||||| ||||||||
Sbjct 686171 TGACGTAACTCGCTCAGAAGACGGCTTTTGTATAAT--ATGTTTAAACATTAAACATGCA 686228
Query 36164 AAATCGCAGTGTAGACCCT 36182
||||| || |||| ||||
Sbjct 686229 AAATCACAATGTAATCCCT 686247
Score = 89.7 bits (98), Expect = 7e-13
Identities = 92/119 (77%), Gaps = 1/119 (1%)
Strand=Plus/Plus
Query 36634 ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 36693
||| ||| ||| ||| | ||| ||||| ||||| ||||| || || || || || |||||
Sbjct 686947 ATTTATACCTT-AGAAAGATCAACTTCCTCCACAGTCCAGAAGGAAGCTTCCGCTTTTTT 687005
Query 36694 ATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTTGATTTT 36752
|||||| | ||| || ||| | ||||||| ||||| | |||||||||| | ||||||
Sbjct 687006 ATACATTTGCCAAATATCAGGCCATTGAATAGGAAAGACAACAAATCTACGTGGATTTT 687064
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658121248615440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |