Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq105 161 1e-34 seq305 122 1e-22 >seq105 Length=615523 Score = 161 bits (178), Expect = 1e-34 Identities = 199/272 (73%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 65088 TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTC 65147 |||||||| ||| | ||| ||||| ||| || || | || | ||| | | ||| Sbjct 157521 TGAATGGAACCATTGTTTGCTATAATTTCATTTTTCATATTTTCGTCCCAAAGATCTCTT 157462 Query 65148 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 65207 || |||||| ||| | | ||| ||||| |||| ||||||||||| ||||| |||| Sbjct 157461 TCAGTTAAATCTCGTAATAAATGAGGATTCACTATCTGAAATTCTCCTGACAAAACTCGT 157402 Query 65208 CGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCA 65267 || || ||||| ||||| || || ||||| | ||| |||||||||||||||||||| || Sbjct 157401 CGTGTATAAATGTTACTAGTGTAAGGTTCTATAGATTCATTATTTCCCAAAATTTGCGCG 157342 Query 65268 GTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATT 65327 || ||||| || ||||| || || | ||| ||| |||||| | |||| | || ||| Sbjct 157341 GTAGATGCTGTTGGCATTGGAGCTATCAACAAAGAATTTCTGACTCCGTGTTTTGCAATT 157282 Query 65328 TTATCTTTTAGAGGTTCCCAATTCCAAAGATC 65359 || |||||||| | | |||| | ||| | ||| Sbjct 157281 TTTTCTTTTAGCGCTGCCCAGTCCCATAAATC 157250 Score = 122 bits (134), Expect = 1e-22 Identities = 124/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 65970 GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA 66029 ||||| || |||||| || || |||||||||| | ||||||||| |||||| ||| Sbjct 156391 GTATATAAAGTTTCGAATTCATCACCCCAAACATCAGCTAATCCAGGAGATTCATGTGGA 156332 Query 66030 CACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAA 66089 |||||||| | ||| | || | ||| |||||||||||||| |||||||||||||| Sbjct 156331 CACATCAAAGTCCAAACACCATTTTCCAAAACTCGTTTCATAAAAAGATCAGGAATCCAC 156272 Query 66090 AGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCT 66131 | ||| |||||| ||||| | ||||| ||| || || ||| Sbjct 156271 AAAGCATAAAATAATTCTCTTGCTCTATTTTCTTCTTTACCT 156230 Score = 104 bits (114), Expect = 3e-17 Identities = 215/314 (68%), Gaps = 12/314 (4%) Strand=Plus/Minus Query 66129 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTAT 66188 || ||||| ||||| ||||| | || | | |||||| |||||| ||||| | ||| Sbjct 156169 CCAGTATTTTTTTTGAGATCCAAAAATTCAAAAATATCTGCATGCCATGGTTCTAGATAT 156110 Query 66189 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 66248 | || | ||||||||||||| |||||||||||||| | |||||||| |||||||| Sbjct 156109 ACAGCAAATGCTCCAGGCCGTTTATTTCCTCCCTGATCAACATATCTAGCTGTGTTATTG 156050 Query 66249 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAG--C 66306 || || || | ||| || | | ||||| ||| |||| || || || ||| | Sbjct 156049 TACACCCTAAGCATCGGTACTAAGCCATTAGATACACCAAGTGTACC--AGCTATTGGTG 155992 Query 66307 TTCCACTTGCACGAAT---AT-TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 66362 | || || || || || || ||| ||| ||| || || || || || ||| Sbjct 155991 TACCTCTAGCTCGTATGCAATGTAC--ATT--TAGTCCAATACCACCAGCTGATTTGCTA 155936 Query 66363 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTA 66422 || ||||| || | || || |||||||| || || || || ||||| || |||| | Sbjct 155935 ATCAATGCACACCTCTTCAATGTATCATAAATTCCTTCAATGCTATCTTCAGTCATTGAA 155876 Query 66423 AGTAGAAAACAGCT 66436 || || ||||| || Sbjct 155875 AGAAGGAAACAACT 155862 Score = 96.9 bits (106), Expect = 5e-15 Identities = 227/336 (68%), Gaps = 15/336 (4%) Strand=Plus/Minus Query 65581 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 65640 |||| |||||||||||||| ||| || ||| ||||||||||| ||||| ||||| | Sbjct 156864 TACCTATAGGTCTATGTCTGAAATTTGACTTTTTGGCTTCTGGAATCGGATAGTAATTGA 156805 Query 65641 TATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGA 65697 ||| |||| ||||| | ||| | | || ||| |||| ||| | || ||||| Sbjct 156804 CATCAATAACTTTATCCAAATTACAAGTAACGATT--TTTG-TCACCTTTTTAAGTTTTT 156748 Query 65698 GAAAATCAAA----TCGCT-CATCTATT-ACAAACATGTTCAATGCAACAGATGCCAGAT 65751 ||||||| || | | | | ||| |||||||| || | |||| || |||| || Sbjct 156747 GAAAATCGAACGTTTTGTTAGAGGAATTCACAAACATATTAACGGCAATTGAAGCCAAAT 156688 Query 65752 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 65811 | || || || || |||| || | ||| || | | || || || | |||||||| Sbjct 156687 TGCATACAGCAACTTCATCCGCGCTGGAATACTGAACAACTTCTGTACATAAATTACTAC 156628 Query 65812 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 65871 ||| || ||||||| ||||| ||||| |||| || || ||| || ||||| | Sbjct 156627 TCTTAATTGTTCCTATGTTTTGCTGATTTGACTTTCGATTGCAGTGATCTTTGTAAAGCA 156568 Query 65872 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAA 65907 | | || || || || || | |||| |||||| Sbjct 156567 TATACGGGGTTCCTGTCTCTACTTGAG---CTATAA 156535 >seq305 Length=1407860 Score = 122 bits (134), Expect = 1e-22 Identities = 132/175 (75%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 36428 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 36487 || |||||||| || | |||||||| ||||| | ||||| || || | ||| || Sbjct 686661 TACGTATCAATTAATAATGAGTACATTTCTGAATGCACATTTTCCATAGCTACTTGGAAG 686720 Query 36488 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTT 36547 || |||||||| | ||||| || ||||||||||| || ||||||||| | | |||| Sbjct 686721 CCATAGAAACAACGTGCCTCTGTTATCTGTACTTCCTGACTAAATCGTTCAACAAGATTT 686780 Query 36548 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT 36602 ||||| || ||||| ||| |||||||||||| || |||||||| ||| |||| Sbjct 686781 TCATTGACAATTCCATCAGAGGCTGCAAAAAATGCTAATACATGAGATATGAAAT 686835 Score = 93.3 bits (102), Expect = 6e-14 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 35986 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 36045 || ||| |||||||||||||| |||||| ||| | || ||||||||| ||||| | Sbjct 686051 CAGTCTGTCTGCGACAAATTCGATATATTGACACATAAGTTTACAATTCATGCCTATCAT 686110 Query 36046 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 36105 || ||| || | || | || | ||||||||||||||| || || ||| | ||||| Sbjct 686111 TTCAACAGGTAATGCATCTGTTAAAAATTCTTGTTCAATTTCCACAGCATCTTTAATAAT 686170 Query 36106 AGATATTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACATCAAACATGCG 36163 || | ||| || | ||| | || ||| |||||||||||| |||||||| Sbjct 686171 TGACGTAACTCGCTCAGAAGACGGCTTTTGTATAAT--ATGTTTAAACATTAAACATGCA 686228 Query 36164 AAATCGCAGTGTAGACCCT 36182 ||||| || |||| |||| Sbjct 686229 AAATCACAATGTAATCCCT 686247 Score = 89.7 bits (98), Expect = 7e-13 Identities = 92/119 (77%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 36634 ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 36693 ||| ||| ||| ||| | ||| ||||| ||||| ||||| || || || || || ||||| Sbjct 686947 ATTTATACCTT-AGAAAGATCAACTTCCTCCACAGTCCAGAAGGAAGCTTCCGCTTTTTT 687005 Query 36694 ATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTTGATTTT 36752 |||||| | ||| || ||| | ||||||| ||||| | |||||||||| | |||||| Sbjct 687006 ATACATTTGCCAAATATCAGGCCATTGAATAGGAAAGACAACAAATCTACGTGGATTTT 687064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658121248615440